nvbio::io::SequenceDataOutputStream Struct Reference

Detailed description

An output stream of SequenceData, allowing to write reads in batches.

Definition at line 691 of file sequence.h.

#include <sequence.h>

Inheritance diagram for nvbio::io::SequenceDataOutputStream:

Public Methods
virtual	~SequenceDataOutputStream ()
virtual void	next (const SequenceDataHost &sequence_data)=0
virtual bool	is_ok ()=0

Related Functions
(Note that these are not member functions.)
SequenceDataOutputStream *	open_output_sequence_file (const char *sequence_file_name, const char *compression)

Constructor & Destructor Documentation

virtual nvbio::io::SequenceDataOutputStream::~SequenceDataOutputStream ( )

inlinevirtual

virtual destructor

Definition at line 695 of file sequence.h.

Member Function Documentation

virtual bool nvbio::io::SequenceDataOutputStream::is_ok ( )

pure virtual

is the stream ok?

Implemented in nvbio::io::SequenceDataOutputFile_FASTQ, nvbio::io::SequenceDataOutputFile_TXT, and nvbio::io::SequenceDataOutputFile_FASTA.

virtual void nvbio::io::SequenceDataOutputStream::next ( const SequenceDataHost &  sequence_data)

pure virtual

next batch

Implemented in nvbio::io::SequenceDataOutputFile_FASTQ, nvbio::io::SequenceDataOutputFile_TXT, and nvbio::io::SequenceDataOutputFile_FASTA.

---

The documentation for this struct was generated from the following file:

• E:/git/nvbio/nvbio/io/sequence/sequence.h