string_set.h File Reference

#include <nvbio/strings/string.h>
#include <nvbio/basic/packedstream.h>
#include <nvbio/basic/vector_view.h>
#include <nvbio/basic/strided_iterator.h>
#include <nvbio/basic/cached_iterator.h>
#include <nvbio/basic/iterator.h>
#include <nvbio/strings/string_set_inl.h>

Go to the source code of this file.

Classes
struct	nvbio::concatenated_string_set_tag
struct	nvbio::sparse_string_set_tag
struct	nvbio::strided_string_set_tag
struct	nvbio::strided_packed_string_set_tag
struct	nvbio::StringSetIterator< StringSetType >
struct	nvbio::ConcatenatedStringSet< StringIterator, OffsetIterator >
struct	nvbio::SparseStringSet< StringIterator, RangeIterator >
struct	nvbio::StridedPackedStringSet< StreamIterator, SymbolType, SYMBOL_SIZE_T, BIG_ENDIAN_T, LengthIterator >
struct	nvbio::StridedStringSet< StringIterator, LengthIterator >
struct	nvbio::string_set_length_functor< string_set_type >
struct	nvbio::CachedPackedConcatStringSet< StreamIterator, SymbolType, SYMBOL_SIZE_T, BIG_ENDIAN_T, LengthIterator, value_type >
struct	nvbio::CachedPackedConcatStringSet< StreamIterator, SymbolType, SYMBOL_SIZE_T, BIG_ENDIAN_T, LengthIterator, uint4 >
struct	nvbio::CachedPackedConcatStringSet< StreamIterator, SymbolType, SYMBOL_SIZE_T, BIG_ENDIAN_T, LengthIterator, uint32 >
struct	nvbio::CachedPackedSparseStringSet< StreamIterator, SymbolType, SYMBOL_SIZE_T, BIG_ENDIAN_T, LengthIterator, value_type >
struct	nvbio::CachedPackedSparseStringSet< StreamIterator, SymbolType, SYMBOL_SIZE_T, BIG_ENDIAN_T, LengthIterator, uint4 >
struct	nvbio::CachedPackedSparseStringSet< StreamIterator, SymbolType, SYMBOL_SIZE_T, BIG_ENDIAN_T, LengthIterator, uint32 >

Namespaces
	nvbio
	Define a vector_view POD type and plain_view() for std::vector.
	nvbio::cuda

Functions
template<typename StringSet >
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE StringSetIterator< StringSet > ::difference_type	nvbio::operator- (const StringSetIterator< StringSet > &it1, const StringSetIterator< StringSet > &it2)
template<typename StringSet >
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE StringSetIterator< StringSet >	nvbio::operator+ (const StringSetIterator< StringSet > &it, const int32 d)
template<typename StringSet >
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE StringSetIterator< StringSet >	nvbio::operator- (const StringSetIterator< StringSet > &it, const int32 d)
template<typename StringSet >
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE StringSetIterator< StringSet > &	nvbio::operator+= (StringSetIterator< StringSet > &it, const int32 d)
template<typename StringSet >
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE StringSetIterator< StringSet > &	nvbio::operator-= (StringSetIterator< StringSet > &it, const int32 d)
template<typename StringSet >
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE bool	nvbio::operator< (const StringSetIterator< StringSet > &it1, const StringSetIterator< StringSet > &it2)
template<typename StringSet >
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE bool	nvbio::operator> (const StringSetIterator< StringSet > &it1, const StringSetIterator< StringSet > &it2)
template<typename StringSet >
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE bool	nvbio::operator<= (const StringSetIterator< StringSet > &it1, const StringSetIterator< StringSet > &it2)
template<typename StringSet >
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE bool	nvbio::operator>= (const StringSetIterator< StringSet > &it1, const StringSetIterator< StringSet > &it2)
template<typename StringSet >
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE bool	nvbio::operator== (const StringSetIterator< StringSet > &it1, const StringSetIterator< StringSet > &it2)
template<typename StringSet >
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE bool	nvbio::operator!= (const StringSetIterator< StringSet > &it1, const StringSetIterator< StringSet > &it2)
template<typename InStringSet , typename StringIterator , typename OffsetIterator >
void	nvbio::cuda::copy (const InStringSet &in_string_set, ConcatenatedStringSet< StringIterator, OffsetIterator > &out_string_set)
template<typename InStringSet , typename StringIterator , typename LengthIterator >
void	nvbio::cuda::copy (const InStringSet &in_string_set, StridedStringSet< StringIterator, LengthIterator > &out_string_set)
template<typename InStringSet , typename StreamIterator , typename SymbolType , uint32 SYMBOL_SIZE_T, bool BIG_ENDIAN_T, typename LengthIterator >
void	nvbio::cuda::copy (const InStringSet &in_string_set, StridedPackedStringSet< StreamIterator, SymbolType, SYMBOL_SIZE_T, BIG_ENDIAN_T, LengthIterator > &out_string_set)
template<typename InStringSet , typename StringIterator , typename OffsetIterator >
void	nvbio::copy (const InStringSet &in_string_set, ConcatenatedStringSet< StringIterator, OffsetIterator > &out_string_set)
template<typename InStringSet , typename StringIterator , typename LengthIterator >
void	nvbio::copy (const InStringSet &in_string_set, StridedStringSet< StringIterator, LengthIterator > &out_string_set)
template<typename InStringSet , typename StreamIterator , typename SymbolType , uint32 SYMBOL_SIZE_T, bool BIG_ENDIAN_T, typename LengthIterator >
void	nvbio::copy (const InStringSet &in_string_set, StridedPackedStringSet< StreamIterator, SymbolType, SYMBOL_SIZE_T, BIG_ENDIAN_T, LengthIterator > &out_string_set)
template<typename StreamIterator , typename SymbolType , uint32 SYMBOL_SIZE_T, bool BIG_ENDIAN_T, typename LengthIterator >
CachedPackedSparseStringSet < StreamIterator, SymbolType, SYMBOL_SIZE_T, BIG_ENDIAN_T, LengthIterator, typename std::iterator_traits < StreamIterator >::value_type > ::cached_string_set	nvbio::make_cached_string_set (const SparseStringSet< PackedStream< StreamIterator, SymbolType, SYMBOL_SIZE_T, BIG_ENDIAN_T >, LengthIterator > string_set)
template<typename StreamIterator , typename SymbolType , uint32 SYMBOL_SIZE_T, bool BIG_ENDIAN_T, typename LengthIterator >
CachedPackedConcatStringSet < StreamIterator, SymbolType, SYMBOL_SIZE_T, BIG_ENDIAN_T, LengthIterator, typename std::iterator_traits < StreamIterator >::value_type > ::cached_string_set	nvbio::make_cached_string_set (const ConcatenatedStringSet< PackedStream< StreamIterator, SymbolType, SYMBOL_SIZE_T, BIG_ENDIAN_T >, LengthIterator > string_set)