__hts_idx_t Struct Reference

Detailed description

Definition at line 456 of file hts.c.

Public Members
int	fmt
int	min_shift
int	n_lvls
int	n_bins
uint32_t	l_meta
int32_t	n
int32_t	m
uint64_t	n_no_coor
bidx_t **	bidx
lidx_t *	lidx
uint8_t *	meta
struct {
uint32_t   last_bin
uint32_t   save_bin
int   last_coor
int   last_tid
int   save_tid
int   finished
uint64_t   last_off
uint64_t   save_off
uint64_t   off_beg
uint64_t   off_end
uint64_t   n_mapped
uint64_t   n_unmapped
}	z

Member Data Documentation

bidx_t** __hts_idx_t::bidx

Definition at line 461 of file hts.c.

int __hts_idx_t::finished

Definition at line 466 of file hts.c.

int __hts_idx_t::fmt

Definition at line 457 of file hts.c.

uint32_t __hts_idx_t::l_meta

Definition at line 458 of file hts.c.

uint32_t __hts_idx_t::last_bin

Definition at line 465 of file hts.c.

int __hts_idx_t::last_coor

Definition at line 466 of file hts.c.

uint64_t __hts_idx_t::last_off

Definition at line 467 of file hts.c.

int __hts_idx_t::last_tid

Definition at line 466 of file hts.c.

lidx_t* __hts_idx_t::lidx

Definition at line 462 of file hts.c.

int32_t __hts_idx_t::m

Definition at line 459 of file hts.c.

uint8_t* __hts_idx_t::meta

Definition at line 463 of file hts.c.

int __hts_idx_t::min_shift

Definition at line 457 of file hts.c.

int32_t __hts_idx_t::n

Definition at line 459 of file hts.c.

int __hts_idx_t::n_bins

Definition at line 457 of file hts.c.

int __hts_idx_t::n_lvls

Definition at line 457 of file hts.c.

uint64_t __hts_idx_t::n_mapped

Definition at line 469 of file hts.c.

uint64_t __hts_idx_t::n_no_coor

Definition at line 460 of file hts.c.

uint64_t __hts_idx_t::n_unmapped

Definition at line 469 of file hts.c.

uint64_t __hts_idx_t::off_beg

Definition at line 468 of file hts.c.

uint64_t __hts_idx_t::off_end

Definition at line 468 of file hts.c.

uint32_t __hts_idx_t::save_bin

Definition at line 465 of file hts.c.

uint64_t __hts_idx_t::save_off

Definition at line 467 of file hts.c.

int __hts_idx_t::save_tid

Definition at line 466 of file hts.c.

struct { ... } __hts_idx_t::z

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The documentation for this struct was generated from the following file:

• E:/git/nvbio/contrib/htslib/hts.c