Detailed description

Definition at line 20 of file BamWriter.cpp.

Public Methods
	BamWriterPrivate (void)

	~BamWriterPrivate (void)

void	Close (void)

void	Open (const std::string &filename, const std::string &samHeader, const BamTools::RefVector &referenceSequences)

void	SaveAlignment (const BamTools::BamAlignment &al)

void	CreatePackedCigar (const std::vector< CigarOp > &cigarOperations, std::string &packedCigar)

void	EncodeQuerySequence (const std::string &query, std::string &encodedQuery)

Constructor & Destructor Documentation

BamTools::BamWriter::BamWriterPrivate::BamWriterPrivate ( void )

inline

Definition at line 30 of file BamWriter.cpp.

BamTools::BamWriter::BamWriterPrivate::~BamWriterPrivate ( void )

inline

Definition at line 31 of file BamWriter.cpp.

void BamTools::BamWriter::BamWriterPrivate::Close ( void )

Definition at line 80 of file BamWriter.cpp.

void BamTools::BamWriter::BamWriterPrivate::CreatePackedCigar	(	const std::vector< CigarOp > &	cigarOperations,
		std::string &	packedCigar
	)

Definition at line 85 of file BamWriter.cpp.

void BamTools::BamWriter::BamWriterPrivate::EncodeQuerySequence	(	const std::string &	query,
		std::string &	encodedQuery
	)

Definition at line 131 of file BamWriter.cpp.

void BamTools::BamWriter::BamWriterPrivate::Open	(	const std::string &	filename,
		const std::string &	samHeader,
		const BamTools::RefVector &	referenceSequences
	)

Definition at line 185 of file BamWriter.cpp.

void BamTools::BamWriter::BamWriterPrivate::SaveAlignment ( const BamTools::BamAlignment & al)

Definition at line 232 of file BamWriter.cpp.

string BamTools::BamWriter::BamWriterPrivate::mbaseQualities

Definition at line 27 of file BamWriter.cpp.

BgzfData BamTools::BamWriter::BamWriterPrivate::mBGZF

Definition at line 23 of file BamWriter.cpp.

string BamTools::BamWriter::BamWriterPrivate::mencodedQuery

Definition at line 26 of file BamWriter.cpp.

string BamTools::BamWriter::BamWriterPrivate::mpackedCigar

Definition at line 25 of file BamWriter.cpp.

The documentation for this struct was generated from the following file: