cufmi::bowtie2::cuda::ReadReference< ScoringQueuesType > Struct Template Reference

Detailed description

template< typename ScoringQueuesType>
struct cufmi::bowtie2::cuda::ReadReference< ScoringQueuesType >

A reference to a given read

Definition at line 275 of file proposal.h.

#include <proposal.h>

Public Types
typedef ScoringQueuesType::hits_storage_type	hits_storage_type
typedef ScoringQueuesType::read_hits_index_type	read_hits_index_type
typedef reference_subtype < typename ScoringQueuesType::active_reads_storage_type > ::type	info_type
typedef ReadHitsReference < read_hits_index_type, hits_storage_type >	hits_type

Public Methods
	ReadReference (ScoringQueuesType scoring_queues, const uint32 read_index)

Public Members
info_type	info
	a reference to this read info More...
hits_type	hits
	a reference to all the hits bound to this read More...

Member Typedef Documentation

template<typename ScoringQueuesType >

typedef ScoringQueuesType::hits_storage_type cufmi::bowtie2::cuda::ReadReference< ScoringQueuesType >::hits_storage_type

Definition at line 277 of file proposal.h.

template<typename ScoringQueuesType >

typedef ReadHitsReference<read_hits_index_type, hits_storage_type> cufmi::bowtie2::cuda::ReadReference< ScoringQueuesType >::hits_type

Definition at line 281 of file proposal.h.

template<typename ScoringQueuesType >

typedef reference_subtype<typename ScoringQueuesType::active_reads_storage_type>::type cufmi::bowtie2::cuda::ReadReference< ScoringQueuesType >::info_type

Definition at line 280 of file proposal.h.

template<typename ScoringQueuesType >

typedef ScoringQueuesType::read_hits_index_type cufmi::bowtie2::cuda::ReadReference< ScoringQueuesType >::read_hits_index_type

Definition at line 278 of file proposal.h.

Constructor & Destructor Documentation

template<typename ScoringQueuesType >

cufmi::bowtie2::cuda::ReadReference< ScoringQueuesType >::ReadReference	(	ScoringQueuesType	scoring_queues,
		const uint32	read_index
	)

constructor

Parameters

scoring_queues	scoring queues container
read_index	index of this read

Member Data Documentation

template<typename ScoringQueuesType >

hits_type cufmi::bowtie2::cuda::ReadReference< ScoringQueuesType >::hits

a reference to all the hits bound to this read

Definition at line 290 of file proposal.h.

template<typename ScoringQueuesType >

info_type cufmi::bowtie2::cuda::ReadReference< ScoringQueuesType >::info

a reference to this read info

Definition at line 289 of file proposal.h.

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The documentation for this struct was generated from the following file:

• E:/git/nvbio/vs/proposal.h