extract_repeat_adjacencies Struct Reference

Detailed description

Definition at line 943 of file kmers_inl.h.

#include <kmers_inl.h>

Public Methods
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE	extract_repeat_adjacencies (const uint32 *_node_offsets, const uint32 *_prefix_uids, const uint32 *_suffix_uids, const uint32 *_edge_counts, uint32 *_node_adj_map, uint32 *_edge_counts_shuffled)
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE void	operator() (const uint32 prefix_idx) const

Public Members
const uint32 *	node_offsets
const uint32 *	prefix_uids
const uint32 *	suffix_uids
const uint32 *	edge_counts
uint32 *	node_adj_map
uint32 *	edge_counts_shuffled

Constructor & Destructor Documentation

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE extract_repeat_adjacencies::extract_repeat_adjacencies ( const uint32 *  _node_offsets, const uint32 *  _prefix_uids, const uint32 *  _suffix_uids, const uint32 *  _edge_counts, uint32 *  _node_adj_map, uint32 *  _edge_counts_shuffled  )

inline

Definition at line 953 of file kmers_inl.h.

Member Function Documentation

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE void extract_repeat_adjacencies::operator() ( const uint32  prefix_idx) const

inline

Definition at line 964 of file kmers_inl.h.

Member Data Documentation

const uint32* extract_repeat_adjacencies::edge_counts

Definition at line 948 of file kmers_inl.h.

uint32* extract_repeat_adjacencies::edge_counts_shuffled

Definition at line 950 of file kmers_inl.h.

uint32* extract_repeat_adjacencies::node_adj_map

Definition at line 949 of file kmers_inl.h.

const uint32* extract_repeat_adjacencies::node_offsets

Definition at line 945 of file kmers_inl.h.

const uint32* extract_repeat_adjacencies::prefix_uids

Definition at line 946 of file kmers_inl.h.

const uint32* extract_repeat_adjacencies::suffix_uids

Definition at line 947 of file kmers_inl.h.

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The documentation for this struct was generated from the following file:

• E:/git/nvbio/nvMicroAssembly/kmers_inl.h