NVBIO: extract_super_kmers_functor< string_set_type > Struct Template Reference

Detailed description

template< typename string_set_type>
struct extract_super_kmers_functor< string_set_type >

Definition at line 532 of file kmers_inl.h.

#include <kmers_inl.h>

Public Types
typedef string_set_type::string_type	sequence

Public Methods
NVBIO_HOST_DEVICE	extract_super_kmers_functor (const uint32 _repeat_global_ids, const uint8 _is_unique_map, const uint32 _global_UID_map, const uint32 _sorted_idx_map, const SequenceSetKmerCoord _coords, const string_set_type _string_set, const uint32 _kmer_size, SequenceSetKmerCoord _super_coords, uint32 _prefix_uids, uint32 _suffix_uids)

NVBIO_HOST_DEVICE void	operator() (const uint32 idx) const

Public Members
const string_set_type	string_set

const uint32 *	repeat_global_ids

const uint8 *	global_unique_flag_map

const uint32 *	global_UID_map

const uint32 *	global_sorted_idx_map

const SequenceSetKmerCoord *	coords

const uint32	kmer_size

SequenceSetKmerCoord *	super_coords

uint32 *	prefix_uids

uint32 *	suffix_uids

Member Typedef Documentation

template<typename string_set_type >

typedef string_set_type::string_type extract_super_kmers_functor< string_set_type >::sequence

Definition at line 534 of file kmers_inl.h.

Constructor & Destructor Documentation

template<typename string_set_type >

NVBIO_HOST_DEVICE extract_super_kmers_functor< string_set_type >::extract_super_kmers_functor	(	const uint32 *	_repeat_global_ids,
		const uint8 *	_is_unique_map,
		const uint32 *	_global_UID_map,
		const uint32 *	_sorted_idx_map,
		const SequenceSetKmerCoord *	_coords,
		const string_set_type	_string_set,
		const uint32	_kmer_size,
		SequenceSetKmerCoord *	_super_coords,
		uint32 *	_prefix_uids,
		uint32 *	_suffix_uids
	)

inline

Definition at line 549 of file kmers_inl.h.

Member Function Documentation

template<typename string_set_type >

NVBIO_HOST_DEVICE void extract_super_kmers_functor< string_set_type >::operator() ( const uint32 idx) const

inline

Definition at line 559 of file kmers_inl.h.

Member Data Documentation

template<typename string_set_type >

const SequenceSetKmerCoord* extract_super_kmers_functor< string_set_type >::coords

Definition at line 540 of file kmers_inl.h.

template<typename string_set_type >

const uint32* extract_super_kmers_functor< string_set_type >::global_sorted_idx_map

Definition at line 539 of file kmers_inl.h.

template<typename string_set_type >

const uint32* extract_super_kmers_functor< string_set_type >::global_UID_map

Definition at line 538 of file kmers_inl.h.

template<typename string_set_type >

const uint8* extract_super_kmers_functor< string_set_type >::global_unique_flag_map

Definition at line 537 of file kmers_inl.h.

template<typename string_set_type >

const uint32 extract_super_kmers_functor< string_set_type >::kmer_size

Definition at line 541 of file kmers_inl.h.

template<typename string_set_type >

uint32* extract_super_kmers_functor< string_set_type >::prefix_uids

Definition at line 545 of file kmers_inl.h.

template<typename string_set_type >

const uint32* extract_super_kmers_functor< string_set_type >::repeat_global_ids

Definition at line 536 of file kmers_inl.h.

template<typename string_set_type >

const string_set_type extract_super_kmers_functor< string_set_type >::string_set

Definition at line 535 of file kmers_inl.h.

template<typename string_set_type >

uint32* extract_super_kmers_functor< string_set_type >::suffix_uids

Definition at line 546 of file kmers_inl.h.

template<typename string_set_type >

SequenceSetKmerCoord* extract_super_kmers_functor< string_set_type >::super_coords

Definition at line 544 of file kmers_inl.h.

The documentation for this struct was generated from the following file:

E:/git/nvbio/nvMicroAssembly/kmers_inl.h