Detailed description

Helper structure to hold a sorted block during BWTE

Definition at line 67 of file bwte.h.

#include <bwte.h>

Public Methods
void	reserve (const uint32 _max_block_strings, const uint32 _max_block_suffixes)

Member Function Documentation

void nvbio::BWTEBlock::reserve	(	const uint32	_max_block_strings,
		const uint32	_max_block_suffixes
	)

inline

reserve space for a maximum block size

Definition at line 48 of file bwte_inl.h.

nvbio::vector<host_tag,uint8> nvbio::BWTEBlock::h_BWT

Definition at line 79 of file bwte.h.

nvbio::vector<host_tag,uint32> nvbio::BWTEBlock::h_cum_lengths

Definition at line 74 of file bwte.h.

nvbio::vector<host_tag,uint32> nvbio::BWTEBlock::h_dollar_id

Definition at line 77 of file bwte.h.

nvbio::vector<host_tag,uint32> nvbio::BWTEBlock::h_dollar_off

Definition at line 76 of file bwte.h.

nvbio::vector<host_tag,uint64> nvbio::BWTEBlock::h_dollar_pos

Definition at line 78 of file bwte.h.

Definition at line 73 of file bwte.h.

nvbio::vector<host_tag,uint32> nvbio::BWTEBlock::h_string_ids

Definition at line 75 of file bwte.h.

uint32 nvbio::BWTEBlock::max_block_strings

Definition at line 70 of file bwte.h.

uint32 nvbio::BWTEBlock::max_block_suffixes

Definition at line 69 of file bwte.h.

uint32 nvbio::BWTEBlock::n_strings

Definition at line 71 of file bwte.h.

uint32 nvbio::BWTEBlock::n_suffixes

Definition at line 72 of file bwte.h.

The documentation for this struct was generated from the following files: