Detailed description

A gzipped FASTQ file implementing the FASTQ_stream model needed by FASTQ_reader

Definition at line 71 of file fastq.h.

#include <fastq.h>

Public Methods
	FASTQ_gzfile (const uint32 buffer_size=64536u)

	FASTQ_gzfile (const char *filename, const uint32 buffer_size=64536u)

	~FASTQ_gzfile ()

void	open (const char *filename)

bool	valid () const

uint8	get ()

uint32	read (uint8 *buffer, const uint32 n)

Constructor & Destructor Documentation

nvbio::FASTQ_gzfile::FASTQ_gzfile ( const uint32 buffer_size = 64536u)

constructor

Definition at line 57 of file fastq.cpp.

nvbio::FASTQ_gzfile::FASTQ_gzfile	(	const char *	filename,
		const uint32	buffer_size = `64536u`
	)

constructor

Definition at line 67 of file fastq.cpp.

nvbio::FASTQ_gzfile::~FASTQ_gzfile ( )

destructor

Definition at line 77 of file fastq.cpp.

uint8 nvbio::FASTQ_gzfile::get ( )

inline

get the next character, or 255 if EOF

Definition at line 35 of file fastq_inl.h.

void nvbio::FASTQ_gzfile::open ( const char * filename)

open a new file

Definition at line 81 of file fastq.cpp.

read a buffer

Definition at line 98 of file fastq.cpp.

bool nvbio::FASTQ_gzfile::valid ( ) const

return whether the file is valid

Definition at line 91 of file fastq.cpp.

The documentation for this struct was generated from the following files: