nvbio::FMIndexFilter< system_tag, fm_index_type > Struct Template Reference

Detailed description

template< typename system_tag, typename fm_index_type>
struct nvbio::FMIndexFilter< system_tag, fm_index_type >

This class implements a FM-index filter which can be used to find and filter matches between an arbitrary string-set and an FM-index.

The filter will return an ordered set of (index-pos,string-id) pairs, where string-id is the index into the string-set and index-pos is an index into the FM-index.

Template Parameters

fm_index_type

the type of the fm-index

Definition at line 61 of file filter.h.

#include <filter.h>

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The documentation for this struct was generated from the following file:

• E:/git/nvbio/nvbio/fmindex/filter.h