NVBIO: nvbio::MEMHit< coord_type > Struct Template Reference

Detailed description

template< typename coord_type>
struct nvbio::MEMHit< coord_type >

: A MEM hit struct, including:

the index position,
the string id,
the span of the string covered by the MEM

Definition at line 234 of file mem.h.

#include <mem.h>

Public Types
typedef vector_type < coord_type, 4u >::type	base_type

Public Methods
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE	MEMHit ()

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE	MEMHit (const base_type vec)

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE	MEMHit (const uint32 index_pos, const uint32 string_id, const uint2 span)

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE	MEMHit (const uint32 index_pos, const uint32 string_id, const uint32 span_begin, const uint32 span_end)

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE coord_type	index_pos () const

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE uint32	string_id () const

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE uint2	span () const

Public Members
base_type	coords

Member Typedef Documentation

template<typename coord_type >

typedef vector_type<coord_type,4u>::type nvbio::MEMHit< coord_type >::base_type

Definition at line 236 of file mem.h.

Constructor & Destructor Documentation

template<typename coord_type >

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE nvbio::MEMHit< coord_type >::MEMHit ( )

inline

Definition at line 239 of file mem.h.

template<typename coord_type >

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE nvbio::MEMHit< coord_type >::MEMHit ( const base_type vec)

inline

Definition at line 242 of file mem.h.

template<typename coord_type >

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE nvbio::MEMHit< coord_type >::MEMHit	(	const uint32	index_pos,
		const uint32	string_id,
		const uint2	span
	)

inline

Definition at line 245 of file mem.h.

template<typename coord_type >

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE nvbio::MEMHit< coord_type >::MEMHit	(	const uint32	index_pos,
		const uint32	string_id,
		const uint32	span_begin,
		const uint32	span_end
	)

inline

Definition at line 254 of file mem.h.

Member Function Documentation

template<typename coord_type >

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE coord_type nvbio::MEMHit< coord_type >::index_pos ( ) const

inline

Definition at line 263 of file mem.h.

template<typename coord_type >

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE uint2 nvbio::MEMHit< coord_type >::span ( ) const

inline

Definition at line 269 of file mem.h.

template<typename coord_type >

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE uint32 nvbio::MEMHit< coord_type >::string_id ( ) const

inline

Definition at line 266 of file mem.h.

Member Data Documentation

template<typename coord_type >

base_type nvbio::MEMHit< coord_type >::coords

Definition at line 271 of file mem.h.

The documentation for this struct was generated from the following file:

E:/git/nvbio/nvbio/fmindex/mem.h