nvbio::SSA_index_multiple_context< K, Iterator > Struct Template Reference

Detailed description

template< uint32 K, typename Iterator = const uint32*>
struct nvbio::SSA_index_multiple_context< K, Iterator >

A simple context to access a SSA_index_multiple structure - a model of SSAInterface.

Definition at line 220 of file ssa.h.

#include <ssa.h>

Public Types
typedef std::iterator_traits < Iterator >::value_type	index_type
typedef index_type	value_type

Public Methods
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE	SSA_index_multiple_context ()
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE	SSA_index_multiple_context (const Iterator ssa)
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE bool	fetch (const index_type i, index_type &r) const
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE bool	has (const index_type i) const

Public Members
Iterator	m_ssa

Member Typedef Documentation

template<uint32 K, typename Iterator = const uint32*>

typedef std::iterator_traits<Iterator>::value_type nvbio::SSA_index_multiple_context< K, Iterator >::index_type

Definition at line 222 of file ssa.h.

template<uint32 K, typename Iterator = const uint32*>

typedef index_type nvbio::SSA_index_multiple_context< K, Iterator >::value_type

Definition at line 223 of file ssa.h.

Constructor & Destructor Documentation

template<uint32 K, typename Iterator = const uint32*>

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE nvbio::SSA_index_multiple_context< K, Iterator >::SSA_index_multiple_context ( )

inline

empty constructor

Definition at line 227 of file ssa.h.

template<uint32 K, typename Iterator = const uint32*>

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE nvbio::SSA_index_multiple_context< K, Iterator >::SSA_index_multiple_context ( const Iterator  ssa)

inline

constructor

Definition at line 231 of file ssa.h.

Member Function Documentation

template<uint32 K, typename Iterator >

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE bool nvbio::SSA_index_multiple_context< K, Iterator >::fetch	(	const index_type	i,
		index_type &	r
	)		const

fetch the i-th value, if stored, return false otherwise.

Parameters

i	requested entry
r	result value

Returns

true if present, false otherwise

Definition at line 487 of file ssa_inl.h.

template<uint32 K, typename Iterator >

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE bool nvbio::SSA_index_multiple_context< K, Iterator >::has

(

const index_type

i)

const

check if the i-th value is present

Parameters

i	requested entry

Returns

true if present, false otherwise

Definition at line 501 of file ssa_inl.h.

Member Data Documentation

template<uint32 K, typename Iterator = const uint32*>

Iterator nvbio::SSA_index_multiple_context< K, Iterator >::m_ssa

Definition at line 247 of file ssa.h.

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The documentation for this struct was generated from the following files:

• E:/git/nvbio/nvbio/fmindex/ssa.h
• E:/git/nvbio/nvbio/fmindex/ssa_inl.h