nvbio::SSA_value_multiple_context< SSAIterator, BitmaskIterator, BlockIterator > Struct Template Reference

Detailed description

template< typename SSAIterator, typename BitmaskIterator, typename BlockIterator>
struct nvbio::SSA_value_multiple_context< SSAIterator, BitmaskIterator, BlockIterator >

A simple context to access a SSA_value_multiple structure - a model of SSAInterface.

Definition at line 99 of file ssa.h.

#include <ssa.h>

Public Methods
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE	SSA_value_multiple_context ()
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE	SSA_value_multiple_context (SSAIterator ssa, BitmaskIterator bitmask, BlockIterator blocks)
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE bool	fetch (const uint32 i, uint32 &r) const
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE bool	has (const uint32 i) const

Public Members
SSAIterator	m_ssa
BitmaskIterator	m_bitmask
BlockIterator	m_blocks

Constructor & Destructor Documentation

template<typename SSAIterator , typename BitmaskIterator , typename BlockIterator >

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE nvbio::SSA_value_multiple_context< SSAIterator, BitmaskIterator, BlockIterator >::SSA_value_multiple_context ( )

inline

empty constructor

Definition at line 103 of file ssa.h.

template<typename SSAIterator , typename BitmaskIterator , typename BlockIterator >

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE nvbio::SSA_value_multiple_context< SSAIterator, BitmaskIterator, BlockIterator >::SSA_value_multiple_context ( SSAIterator  ssa, BitmaskIterator  bitmask, BlockIterator  blocks  )

inline

constructor

Definition at line 107 of file ssa.h.

Member Function Documentation

template<typename SSAIterator , typename BitmaskIterator , typename BlockIterator >

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE bool nvbio::SSA_value_multiple_context< SSAIterator, BitmaskIterator, BlockIterator >::fetch	(	const uint32	i,
		uint32 &	r
	)		const

fetch the i-th value, if stored, return false otherwise.

Parameters

i	requested entry
r	result value

Returns

true if present, false otherwise

Definition at line 220 of file ssa_inl.h.

template<typename SSAIterator , typename BitmaskIterator , typename BlockIterator >

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE bool nvbio::SSA_value_multiple_context< SSAIterator, BitmaskIterator, BlockIterator >::has

(

const uint32

i)

const

check if the i-th value is present

Parameters

i	requested entry

Returns

true if present, false otherwise

Definition at line 252 of file ssa_inl.h.

Member Data Documentation

template<typename SSAIterator , typename BitmaskIterator , typename BlockIterator >

BitmaskIterator nvbio::SSA_value_multiple_context< SSAIterator, BitmaskIterator, BlockIterator >::m_bitmask

Definition at line 126 of file ssa.h.

template<typename SSAIterator , typename BitmaskIterator , typename BlockIterator >

BlockIterator nvbio::SSA_value_multiple_context< SSAIterator, BitmaskIterator, BlockIterator >::m_blocks

Definition at line 127 of file ssa.h.

template<typename SSAIterator , typename BitmaskIterator , typename BlockIterator >

SSAIterator nvbio::SSA_value_multiple_context< SSAIterator, BitmaskIterator, BlockIterator >::m_ssa

Definition at line 125 of file ssa.h.

---

The documentation for this struct was generated from the following files:

• E:/git/nvbio/nvbio/fmindex/ssa.h
• E:/git/nvbio/nvbio/fmindex/ssa_inl.h