nvbio::SetBWTHandler Struct Reference

Detailed description

base virtual interface used by all string-set BWT handlers (a model of SetBWTOutputHandler)

Definition at line 57 of file sufsort_utils.h.

#include <sufsort_utils.h>

Inheritance diagram for nvbio::SetBWTHandler:

Public Methods
virtual	~SetBWTHandler ()
virtual void	process (const uint32 n_suffixes, const uint32 bits_per_symbol, const uint32 *bwt, const uint32 n_dollars, const uint64 *dollar_pos, const uint64 *dollar_ids)
virtual void	process (const uint32 n_suffixes, const uint8 *bwt, const uint32 n_dollars, const uint64 *dollar_pos, const uint64 *dollar_ids)

Constructor & Destructor Documentation

virtual nvbio::SetBWTHandler::~SetBWTHandler ( )

inlinevirtual

virtual destructor

Definition at line 61 of file sufsort_utils.h.

Member Function Documentation

virtual void nvbio::SetBWTHandler::process ( const uint32  n_suffixes, const uint32  bits_per_symbol, const uint32 *  bwt, const uint32  n_dollars, const uint64 *  dollar_pos, const uint64 *  dollar_ids  )

inlinevirtual

process a batch of BWT symbols

Reimplemented in nvbio::HostBWTHandler< PackedStream< word_type *, uint8, SYMBOL_SIZE, BIG_ENDIAN, uint64 > >, nvbio::HostBWTHandler< OutputIterator >, and nvbio::DeviceBWTHandler< OutputIterator >.

Definition at line 65 of file sufsort_utils.h.

virtual void nvbio::SetBWTHandler::process ( const uint32  n_suffixes, const uint8 *  bwt, const uint32  n_dollars, const uint64 *  dollar_pos, const uint64 *  dollar_ids  )

inlinevirtual

process a batch of BWT symbols

Reimplemented in nvbio::HostBWTHandler< PackedStream< word_type *, uint8, SYMBOL_SIZE, BIG_ENDIAN, uint64 > >, nvbio::HostBWTHandler< OutputIterator >, and nvbio::DeviceBWTHandler< OutputIterator >.

Definition at line 75 of file sufsort_utils.h.

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The documentation for this struct was generated from the following file:

• E:/git/nvbio/nvbio/sufsort/sufsort_utils.h