nvbio::aln::MyersTag< ALPHABET_SIZE_T > Struct Template Reference

Detailed description

template< uint32 ALPHABET_SIZE_T>
struct nvbio::aln::MyersTag< ALPHABET_SIZE_T >

Myers bit-vector algorithm.

Myers bit-vector algorithm, only supported for the EditDistanceAligner

Template Parameters

ALPHABET_SIZE_T

the size of the alphabet, in symbols; currently there are fast specializations for alphabets of 2, 4 and 5 symbols.

Definition at line 87 of file alignment_base.h.

#include <alignment_base.h>

Static Public Members
static const uint32	ALPHABET_SIZE = ALPHABET_SIZE_T

Member Data Documentation

template<uint32 ALPHABET_SIZE_T>

const uint32 nvbio::aln::MyersTag< ALPHABET_SIZE_T >::ALPHABET_SIZE = ALPHABET_SIZE_T

static

Definition at line 87 of file alignment_base.h.

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The documentation for this struct was generated from the following file:

• E:/git/nvbio/nvbio/alignment/alignment_base.h