Detailed description

An adapter implementation of the Smith-Waterman Scoring Scheme model producing the edit distance scoring

Definition at line 45 of file ed_utils.h.

#include <ed_utils.h>

Public Methods
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE int32	match (const uint8 q=0) const

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE int32	mismatch (const uint8 q=0) const

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE int32	mismatch (const uint8 a, const uint8 b, const uint8 q=0) const

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE int32	deletion () const

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE int32	insertion () const

Member Function Documentation

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE int32 nvbio::aln::priv::EditDistanceSWScheme::deletion ( ) const

inline

Definition at line 50 of file ed_utils.h.

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE int32 nvbio::aln::priv::EditDistanceSWScheme::insertion ( ) const

inline

Definition at line 51 of file ed_utils.h.

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE int32 nvbio::aln::priv::EditDistanceSWScheme::match ( const uint8 q = 0) const

inline

Definition at line 47 of file ed_utils.h.

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE int32 nvbio::aln::priv::EditDistanceSWScheme::mismatch ( const uint8 q = 0) const

inline

Definition at line 48 of file ed_utils.h.

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE int32 nvbio::aln::priv::EditDistanceSWScheme::mismatch	(	const uint8	a,
		const uint8	b,
		const uint8	q = `0`
	)		const

inline

Definition at line 49 of file ed_utils.h.

The documentation for this struct was generated from the following file: