nvbio::aln::trivial_quality_string Struct Reference

Detailed description

A trivial implementation of a quality string, constantly zero; This class has both a string and an iterator interface, as it is used as its own iterator.

Definition at line 228 of file utils.h.

#include <utils.h>

Public Types
typedef random_access_universal_iterator_tag	iterator_category
typedef uint8	value_type
typedef uint8	reference
typedef const uint8 *	pointer
typedef int32	difference_type
typedef uint32	index_type
typedef trivial_quality_string	iterator
typedef trivial_quality_string	const_iterator
typedef trivial_quality_string	forward_iterator

Public Methods
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE uint8	operator[] (const index_type i) const
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE uint8	operator* () const
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE trivial_quality_string &	operator++ ()
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE trivial_quality_string	operator++ (int dummy)
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE trivial_quality_string &	operator-- ()
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE trivial_quality_string	operator-- (int dummy)
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE iterator	begin () const

Static Public Members
static const uint32	SYMBOL_SIZE = 8u

Member Typedef Documentation

typedef trivial_quality_string nvbio::aln::trivial_quality_string::const_iterator

Definition at line 239 of file utils.h.

typedef int32 nvbio::aln::trivial_quality_string::difference_type

Definition at line 236 of file utils.h.

typedef trivial_quality_string nvbio::aln::trivial_quality_string::forward_iterator

Definition at line 240 of file utils.h.

typedef uint32 nvbio::aln::trivial_quality_string::index_type

Definition at line 237 of file utils.h.

typedef trivial_quality_string nvbio::aln::trivial_quality_string::iterator

Definition at line 238 of file utils.h.

typedef random_access_universal_iterator_tag nvbio::aln::trivial_quality_string::iterator_category

Definition at line 232 of file utils.h.

typedef const uint8* nvbio::aln::trivial_quality_string::pointer

Definition at line 235 of file utils.h.

typedef uint8 nvbio::aln::trivial_quality_string::reference

Definition at line 234 of file utils.h.

typedef uint8 nvbio::aln::trivial_quality_string::value_type

Definition at line 233 of file utils.h.

Member Function Documentation

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE iterator nvbio::aln::trivial_quality_string::begin ( void  ) const

inline

return beginning iterator

Definition at line 275 of file utils.h.

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE uint8 nvbio::aln::trivial_quality_string::operator* ( ) const

inline

dereference operator

Definition at line 250 of file utils.h.

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE trivial_quality_string& nvbio::aln::trivial_quality_string::operator++ ( )

inline

pre-decrement

Definition at line 255 of file utils.h.

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE trivial_quality_string nvbio::aln::trivial_quality_string::operator++ ( int  dummy)

inline

pre-increment

Definition at line 260 of file utils.h.

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE trivial_quality_string& nvbio::aln::trivial_quality_string::operator-- ( )

inline

pre-decrement

Definition at line 265 of file utils.h.

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE trivial_quality_string nvbio::aln::trivial_quality_string::operator-- ( int  dummy)

inline

post-decrement

Definition at line 270 of file utils.h.

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE uint8 nvbio::aln::trivial_quality_string::operator[] ( const index_type  i) const

inline

indexing operator

Definition at line 245 of file utils.h.

Member Data Documentation

const uint32 nvbio::aln::trivial_quality_string::SYMBOL_SIZE = 8u

static

Definition at line 230 of file utils.h.

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The documentation for this struct was generated from the following file:

• E:/git/nvbio/nvbio/alignment/utils.h