nvbio::alndiff::Alignment Member List

This is the complete list of members for nvbio::alndiff::Alignment, including all inherited members.

Alignment()	nvbio::alndiff::Alignment	inline
dels	nvbio::alndiff::Alignment
DUPLICATE enum value	nvbio::alndiff::Alignment
ed	nvbio::alndiff::Alignment
flag	nvbio::alndiff::Alignment
has_second	nvbio::alndiff::Alignment
ins	nvbio::alndiff::Alignment
is_ambiguous() const	nvbio::alndiff::Alignment	inline
is_mapped() const	nvbio::alndiff::Alignment	inline
is_rc() const	nvbio::alndiff::Alignment	inline
is_unique() const	nvbio::alndiff::Alignment	inline
mapped_read_bases() const	nvbio::alndiff::Alignment	inline
mapped_ref_bases() const	nvbio::alndiff::Alignment	inline
mapQ	nvbio::alndiff::Alignment
mate	nvbio::alndiff::Alignment
MATE_REVERSE enum value	nvbio::alndiff::Alignment
MATE_UNMAPPED enum value	nvbio::alndiff::Alignment
n_gape	nvbio::alndiff::Alignment
n_gapo	nvbio::alndiff::Alignment
n_mm	nvbio::alndiff::Alignment
PAIRED enum value	nvbio::alndiff::Alignment
pos	nvbio::alndiff::Alignment
PROPER_PAIR enum value	nvbio::alndiff::Alignment
QC_FAILED enum value	nvbio::alndiff::Alignment
READ_1 enum value	nvbio::alndiff::Alignment
READ_2 enum value	nvbio::alndiff::Alignment
read_id	nvbio::alndiff::Alignment
read_len	nvbio::alndiff::Alignment
ref_id	nvbio::alndiff::Alignment
REVERSE enum value	nvbio::alndiff::Alignment
score	nvbio::alndiff::Alignment
sec_score	nvbio::alndiff::Alignment
SECONDARY enum value	nvbio::alndiff::Alignment
subs	nvbio::alndiff::Alignment
trimmed() const	nvbio::alndiff::Alignment	inline
UNMAPPED enum value	nvbio::alndiff::Alignment