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nvbio::alndiff::Alignment Member List

This is the complete list of members for nvbio::alndiff::Alignment, including all inherited members.

Alignment()nvbio::alndiff::Alignmentinline
delsnvbio::alndiff::Alignment
DUPLICATE enum valuenvbio::alndiff::Alignment
ednvbio::alndiff::Alignment
flagnvbio::alndiff::Alignment
has_secondnvbio::alndiff::Alignment
insnvbio::alndiff::Alignment
is_ambiguous() const nvbio::alndiff::Alignmentinline
is_mapped() const nvbio::alndiff::Alignmentinline
is_rc() const nvbio::alndiff::Alignmentinline
is_unique() const nvbio::alndiff::Alignmentinline
mapped_read_bases() const nvbio::alndiff::Alignmentinline
mapped_ref_bases() const nvbio::alndiff::Alignmentinline
mapQnvbio::alndiff::Alignment
matenvbio::alndiff::Alignment
MATE_REVERSE enum valuenvbio::alndiff::Alignment
MATE_UNMAPPED enum valuenvbio::alndiff::Alignment
n_gapenvbio::alndiff::Alignment
n_gaponvbio::alndiff::Alignment
n_mmnvbio::alndiff::Alignment
PAIRED enum valuenvbio::alndiff::Alignment
posnvbio::alndiff::Alignment
PROPER_PAIR enum valuenvbio::alndiff::Alignment
QC_FAILED enum valuenvbio::alndiff::Alignment
READ_1 enum valuenvbio::alndiff::Alignment
READ_2 enum valuenvbio::alndiff::Alignment
read_idnvbio::alndiff::Alignment
read_lennvbio::alndiff::Alignment
ref_idnvbio::alndiff::Alignment
REVERSE enum valuenvbio::alndiff::Alignment
scorenvbio::alndiff::Alignment
sec_scorenvbio::alndiff::Alignment
SECONDARY enum valuenvbio::alndiff::Alignment
subsnvbio::alndiff::Alignment
trimmed() const nvbio::alndiff::Alignmentinline
UNMAPPED enum valuenvbio::alndiff::Alignment
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