Definition at line 36 of file alignment.h.
#include <alignment.h>
|
| enum | {
PAIRED = 1,
PROPER_PAIR = 2,
UNMAPPED = 4,
MATE_UNMAPPED = 8,
REVERSE = 16,
MATE_REVERSE = 32,
READ_1 = 64,
READ_2 = 128,
SECONDARY = 256,
QC_FAILED = 512,
DUPLICATE = 1024
} |
| |
| Enumerator |
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| PAIRED |
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| PROPER_PAIR |
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| UNMAPPED |
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| MATE_UNMAPPED |
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| REVERSE |
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| MATE_REVERSE |
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| READ_1 |
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| READ_2 |
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| SECONDARY |
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| QC_FAILED |
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| DUPLICATE |
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Definition at line 38 of file alignment.h.
| nvbio::alndiff::Alignment::Alignment |
( |
) | |
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inline |
| bool nvbio::alndiff::Alignment::is_ambiguous |
( |
) | |
const |
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inline |
| bool nvbio::alndiff::Alignment::is_mapped |
( |
) | |
const |
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inline |
| bool nvbio::alndiff::Alignment::is_rc |
( |
) | |
const |
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inline |
| bool nvbio::alndiff::Alignment::is_unique |
( |
) | |
const |
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inline |
| uint16 nvbio::alndiff::Alignment::mapped_read_bases |
( |
) | |
const |
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inline |
| uint16 nvbio::alndiff::Alignment::mapped_ref_bases |
( |
) | |
const |
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inline |
| uint16 nvbio::alndiff::Alignment::trimmed |
( |
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const |
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inline |
| uint16 nvbio::alndiff::Alignment::dels |
| uint8 nvbio::alndiff::Alignment::ed |
| uint32 nvbio::alndiff::Alignment::flag |
| uint8 nvbio::alndiff::Alignment::has_second |
| uint16 nvbio::alndiff::Alignment::ins |
| uint8 nvbio::alndiff::Alignment::mapQ |
| uint32 nvbio::alndiff::Alignment::mate |
| uint8 nvbio::alndiff::Alignment::n_gape |
| uint8 nvbio::alndiff::Alignment::n_gapo |
| uint8 nvbio::alndiff::Alignment::n_mm |
| uint32 nvbio::alndiff::Alignment::pos |
| uint32 nvbio::alndiff::Alignment::read_id |
| uint32 nvbio::alndiff::Alignment::read_len |
| uint32 nvbio::alndiff::Alignment::ref_id |
| int32 nvbio::alndiff::Alignment::score |
| int32 nvbio::alndiff::Alignment::sec_score |
| uint16 nvbio::alndiff::Alignment::subs |
The documentation for this struct was generated from the following file:
1.8.4