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nvbio::alndiff::BAMAlignmentStream Member List

This is the complete list of members for nvbio::alndiff::BAMAlignmentStream, including all inherited members.

analyze_cigar(const std::vector< BamTools::CigarOp > &cigar, Alignment *aln)nvbio::alndiff::BAMAlignmentStreaminline
analyze_md(const char *md, Alignment *aln)nvbio::alndiff::BAMAlignmentStreaminline
BAMAlignmentStream(const char *file_name)nvbio::alndiff::BAMAlignmentStreaminline
is_ok()nvbio::alndiff::BAMAlignmentStreaminlinevirtual
m_bam_readernvbio::alndiff::BAMAlignmentStream
m_offsetnvbio::alndiff::BAMAlignmentStream
next_batch(const uint32 count, Alignment *batch)nvbio::alndiff::BAMAlignmentStreaminlinevirtual
~AlignmentStream()nvbio::alndiff::AlignmentStreaminlinevirtual
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