nvbio::alndiff::AlignmentStream Struct Reference

Detailed description

Definition at line 140 of file alignment.h.

#include <alignment.h>

Inheritance diagram for nvbio::alndiff::AlignmentStream:

Public Methods
virtual	~AlignmentStream ()
virtual bool	is_ok ()
virtual uint32	next_batch (const uint32 count, Alignment *batch)

Constructor & Destructor Documentation

virtual nvbio::alndiff::AlignmentStream::~AlignmentStream ( )

inlinevirtual

virtual destructor

Definition at line 144 of file alignment.h.

Member Function Documentation

virtual bool nvbio::alndiff::AlignmentStream::is_ok ( void  )

inlinevirtual

return if the stream is ok

Reimplemented in nvbio::alndiff::DebugAlignmentStream, and nvbio::alndiff::BAMAlignmentStream.

Definition at line 148 of file alignment.h.

virtual uint32 nvbio::alndiff::AlignmentStream::next_batch ( const uint32  count, Alignment *  batch  )

inlinevirtual

get the next batch

Reimplemented in nvbio::alndiff::DebugAlignmentStream, and nvbio::alndiff::BAMAlignmentStream.

Definition at line 152 of file alignment.h.

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The documentation for this struct was generated from the following file:

• E:/git/nvbio/nvbio-aln-diff/alignment.h