nvbio::alndiff::Filter Struct Reference

Detailed description

Definition at line 36 of file filter.h.

#include <filter.h>

Public Types
enum	Flags { DISTANT = 1u, DISCORDANT = 2u, DIFFERENT_REF = 4u, ALL = 0xFFFFFFFFu }
enum	Statistics {   ED = 1u, MAPQ = 2u, MMS = 4u, INS = 8u,   DELS = 16u, SCORE = 32u }

Public Methods
	Filter ()
	Filter (const char *file_name, const uint32 flags, const uint32 stats, const int32 delta)
	~Filter ()
void	operator() (const int32 delta, const uint32 flags, const Statistics stat, const uint32 read_id)
uint32	filtered () const
void	flush ()

Public Members
FILE *	m_file
uint32	m_flags
uint32	m_stats
int32	m_delta
uint32	m_filtered

Member Enumeration Documentation

enum nvbio::alndiff::Filter::Flags

Enumerator
DISTANT
DISCORDANT
DIFFERENT_REF
ALL

Definition at line 38 of file filter.h.

enum nvbio::alndiff::Filter::Statistics

Enumerator
ED
MAPQ
MMS
INS
DELS
SCORE

Definition at line 39 of file filter.h.

Constructor & Destructor Documentation

nvbio::alndiff::Filter::Filter ( )

inline

Definition at line 43 of file filter.h.

nvbio::alndiff::Filter::Filter ( const char *  file_name, const uint32  flags, const uint32  stats, const int32  delta  )

inline

Definition at line 52 of file filter.h.

nvbio::alndiff::Filter::~Filter ( )

inline

Definition at line 69 of file filter.h.

Member Function Documentation

uint32 nvbio::alndiff::Filter::filtered ( ) const

inline

Definition at line 97 of file filter.h.

void nvbio::alndiff::Filter::flush ( )

inline

Definition at line 101 of file filter.h.

void nvbio::alndiff::Filter::operator() ( const int32  delta, const uint32  flags, const Statistics  stat, const uint32  read_id  )

inline

Definition at line 80 of file filter.h.

Member Data Documentation

int32 nvbio::alndiff::Filter::m_delta

Definition at line 106 of file filter.h.

FILE* nvbio::alndiff::Filter::m_file

Definition at line 103 of file filter.h.

uint32 nvbio::alndiff::Filter::m_filtered

Definition at line 107 of file filter.h.

uint32 nvbio::alndiff::Filter::m_flags

Definition at line 104 of file filter.h.

uint32 nvbio::alndiff::Filter::m_stats

Definition at line 105 of file filter.h.

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The documentation for this struct was generated from the following file:

• E:/git/nvbio/nvbio-aln-diff/filter.h