nvbio::bowtie2::cuda::AlignmentStats Struct Reference

Detailed description

Definition at line 45 of file stats.h.

#include <stats.h>

Public Methods
	AlignmentStats ()
void	merge (const AlignmentStats &stats)

Public Members
uint64	mapq_bins [64]
uint64	mapq_log_bins [8]
uint32	n_mapped
uint32	n_ambiguous
uint32	n_unambiguous
uint32	n_unique
uint32	n_multiple
std::vector< uint32 >	mapped_ed_histogram
std::vector< uint32 >	mapped_ed_histogram_fwd
std::vector< uint32 >	mapped_ed_histogram_rev
std::vector< uint32 >	mapped_log_ed_histogram
std::vector< uint32 >	mapped_log_mapq_histogram
uint32	mapped_ed_correlation [64][64]

Constructor & Destructor Documentation

nvbio::bowtie2::cuda::AlignmentStats::AlignmentStats ( )

inline

Definition at line 47 of file stats.h.

Member Function Documentation

void nvbio::bowtie2::cuda::AlignmentStats::merge ( const AlignmentStats &  stats)

inline

Definition at line 93 of file stats.h.

Member Data Documentation

uint32 nvbio::bowtie2::cuda::AlignmentStats::mapped_ed_correlation[64][64]

Definition at line 90 of file stats.h.

std::vector<uint32> nvbio::bowtie2::cuda::AlignmentStats::mapped_ed_histogram

Definition at line 83 of file stats.h.

std::vector<uint32> nvbio::bowtie2::cuda::AlignmentStats::mapped_ed_histogram_fwd

Definition at line 84 of file stats.h.

std::vector<uint32> nvbio::bowtie2::cuda::AlignmentStats::mapped_ed_histogram_rev

Definition at line 85 of file stats.h.

std::vector<uint32> nvbio::bowtie2::cuda::AlignmentStats::mapped_log_ed_histogram

Definition at line 86 of file stats.h.

std::vector<uint32> nvbio::bowtie2::cuda::AlignmentStats::mapped_log_mapq_histogram

Definition at line 87 of file stats.h.

uint64 nvbio::bowtie2::cuda::AlignmentStats::mapq_bins[64]

Definition at line 70 of file stats.h.

uint64 nvbio::bowtie2::cuda::AlignmentStats::mapq_log_bins[8]

Definition at line 71 of file stats.h.

uint32 nvbio::bowtie2::cuda::AlignmentStats::n_ambiguous

Definition at line 76 of file stats.h.

uint32 nvbio::bowtie2::cuda::AlignmentStats::n_mapped

Definition at line 74 of file stats.h.

uint32 nvbio::bowtie2::cuda::AlignmentStats::n_multiple

Definition at line 80 of file stats.h.

uint32 nvbio::bowtie2::cuda::AlignmentStats::n_unambiguous

Definition at line 77 of file stats.h.

uint32 nvbio::bowtie2::cuda::AlignmentStats::n_unique

Definition at line 79 of file stats.h.

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The documentation for this struct was generated from the following file:

• E:/git/nvbio/nvBowtie/bowtie2/cuda/stats.h