nvbio::bowtie2::cuda::BowtieMapq2< ScoringSchemeType > Struct Template Reference

Detailed description

template< typename ScoringSchemeType>
struct nvbio::bowtie2::cuda::BowtieMapq2< ScoringSchemeType >

Bowtie2 Mapping Quality Calculator, V2

Definition at line 145 of file mapq.h.

#include <mapq.h>

Public Types
typedef ScoringSchemeType	scoring_scheme_type

Public Methods
	BowtieMapq2 (const ScoringSchemeType sc)
NVBIO_HOST_DEVICE uint32	operator() (const io::BestPairedAlignments &best_alignments, const uint32 read_len, const uint32 o_read_len) const

Member Typedef Documentation

template<typename ScoringSchemeType >

typedef ScoringSchemeType nvbio::bowtie2::cuda::BowtieMapq2< ScoringSchemeType >::scoring_scheme_type

Definition at line 147 of file mapq.h.

Constructor & Destructor Documentation

template<typename ScoringSchemeType >

nvbio::bowtie2::cuda::BowtieMapq2< ScoringSchemeType >::BowtieMapq2 ( const ScoringSchemeType  sc)

inline

constructor

Definition at line 151 of file mapq.h.

Member Function Documentation

template<typename ScoringSchemeType >

NVBIO_HOST_DEVICE uint32 nvbio::bowtie2::cuda::BowtieMapq2< ScoringSchemeType >::operator() ( const io::BestPairedAlignments &  best_alignments, const uint32  read_len, const uint32  o_read_len  ) const

inline

compute mapping quality

Definition at line 156 of file mapq.h.

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The documentation for this struct was generated from the following file:

• E:/git/nvbio/nvBowtie/bowtie2/cuda/mapq.h