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nvbio::bowtie2::cuda::InputThreadSE Struct Reference

Detailed description

Definition at line 48 of file input_thread.h.

#include <input_thread.h>

Inheritance diagram for nvbio::bowtie2::cuda::InputThreadSE:
nvbio::Thread< InputThreadSE > nvbio::ThreadBase

Public Methods

 InputThreadSE (io::SequenceDataStream *read_data_stream, Stats &_stats, const uint32 batch_size, const uint32 read_length)
void run ()
io::SequenceDataHostnext (uint32 *offset=NULL)
void release (io::SequenceDataHost *read_data)
uint32 batch_size () const
- Public Methods inherited from nvbio::Thread< InputThreadSE >
void create ()
 create the th
void join ()
 join the th
- Public Methods inherited from nvbio::ThreadBase
 ThreadBase ()
 ~ThreadBase ()
void set_id (const uint32 id)
uint32 get_id () const
void create (void *(*func)(void *), void *arg)
 create the th
void join ()
 join the th

Static Public Members

static const uint32 BUFFERS = 4

Constructor & Destructor Documentation

nvbio::bowtie2::cuda::InputThreadSE::InputThreadSE ( io::SequenceDataStream read_data_stream,
Stats _stats,
const uint32  batch_size,
const uint32  read_length 

Definition at line 52 of file input_thread.h.

Member Function Documentation

uint32 nvbio::bowtie2::cuda::InputThreadSE::batch_size ( ) const

Definition at line 68 of file input_thread.h.

io::SequenceDataHost * nvbio::bowtie2::cuda::InputThreadSE::next ( uint32 offset = NULL)

Definition at line 149 of file input_thread.cpp.

void nvbio::bowtie2::cuda::InputThreadSE::release ( io::SequenceDataHost read_data)

Definition at line 177 of file input_thread.cpp.

void nvbio::bowtie2::cuda::InputThreadSE::run ( )

Definition at line 42 of file input_thread.cpp.

Member Data Documentation

const uint32 nvbio::bowtie2::cuda::InputThreadSE::BUFFERS = 4

Definition at line 50 of file input_thread.h.

The documentation for this struct was generated from the following files: