NVBIO: nvbio::bowtie2::cuda::MapqFunctorPE< MapqCalculator, ReadData > Struct Template Reference

Detailed description

template< typename MapqCalculator, typename ReadData>
struct nvbio::bowtie2::cuda::MapqFunctorPE< MapqCalculator, ReadData >

Definition at line 50 of file aligner_best_approx_paired.h.

#include <aligner_best_approx_paired.h>

Public Methods
	MapqFunctorPE (const uint32 _mate, MapqCalculator _mapq_eval, const io::Alignment _best_data, const io::Alignment _best_data_o, const uint32 _best_stride, const ReadData _read_data1, const ReadData _read_data2)

NVBIO_HOST_DEVICE uint8	operator() (const uint32 read_id)

Public Members
const MapqCalculator	mapq_eval

const io::Alignment *	best_data

const io::Alignment *	best_data_o

const uint32	best_stride

const ReadData	read_data1

const ReadData	read_data2

const uint32	mate

Constructor & Destructor Documentation

template<typename MapqCalculator, typename ReadData>

nvbio::bowtie2::cuda::MapqFunctorPE< MapqCalculator, ReadData >::MapqFunctorPE	(	const uint32	_mate,
		MapqCalculator	_mapq_eval,
		const io::Alignment *	_best_data,
		const io::Alignment *	_best_data_o,
		const uint32	_best_stride,
		const ReadData	_read_data1,
		const ReadData	_read_data2
	)

inline

Definition at line 52 of file aligner_best_approx_paired.h.

Member Function Documentation

template<typename MapqCalculator, typename ReadData>

NVBIO_HOST_DEVICE uint8 nvbio::bowtie2::cuda::MapqFunctorPE< MapqCalculator, ReadData >::operator() ( const uint32 read_id)

inline

Definition at line 69 of file aligner_best_approx_paired.h.

Member Data Documentation

template<typename MapqCalculator, typename ReadData>

const io::Alignment* nvbio::bowtie2::cuda::MapqFunctorPE< MapqCalculator, ReadData >::best_data

Definition at line 90 of file aligner_best_approx_paired.h.

template<typename MapqCalculator, typename ReadData>

const io::Alignment* nvbio::bowtie2::cuda::MapqFunctorPE< MapqCalculator, ReadData >::best_data_o

Definition at line 91 of file aligner_best_approx_paired.h.

template<typename MapqCalculator, typename ReadData>

const uint32 nvbio::bowtie2::cuda::MapqFunctorPE< MapqCalculator, ReadData >::best_stride

Definition at line 92 of file aligner_best_approx_paired.h.

template<typename MapqCalculator, typename ReadData>

const MapqCalculator nvbio::bowtie2::cuda::MapqFunctorPE< MapqCalculator, ReadData >::mapq_eval

Definition at line 89 of file aligner_best_approx_paired.h.

template<typename MapqCalculator, typename ReadData>

const uint32 nvbio::bowtie2::cuda::MapqFunctorPE< MapqCalculator, ReadData >::mate

Definition at line 95 of file aligner_best_approx_paired.h.

template<typename MapqCalculator, typename ReadData>

const ReadData nvbio::bowtie2::cuda::MapqFunctorPE< MapqCalculator, ReadData >::read_data1

Definition at line 93 of file aligner_best_approx_paired.h.

template<typename MapqCalculator, typename ReadData>

const ReadData nvbio::bowtie2::cuda::MapqFunctorPE< MapqCalculator, ReadData >::read_data2

Definition at line 94 of file aligner_best_approx_paired.h.

The documentation for this struct was generated from the following file:

E:/git/nvbio/nvBowtie/bowtie2/cuda/aligner_best_approx_paired.h