nvbio::bowtie2::cuda::detail::Backtracker< vector > Struct Template Reference

Detailed description

template< typename vector>
struct nvbio::bowtie2::cuda::detail::Backtracker< vector >

A backtracking context, forming a CIGAR on the go. As the length is unknown till the very end, the CIGAR is stored backwards.

Definition at line 126 of file alignment_utils.h.

#include <alignment_utils.h>

Public Methods
NVBIO_FORCEINLINE NVBIO_DEVICE	Backtracker (vector vec, const uint32 _capacity)
NVBIO_FORCEINLINE NVBIO_DEVICE void	clip (const uint32 l)
NVBIO_FORCEINLINE NVBIO_DEVICE void	push (uint8 type)

Public Members
vector	out
uint32	size
uint8	prev
uint32	capacity

Constructor & Destructor Documentation

template<typename vector>

NVBIO_FORCEINLINE NVBIO_DEVICE nvbio::bowtie2::cuda::detail::Backtracker< vector >::Backtracker ( vector  vec, const uint32  _capacity  )

inline

Definition at line 130 of file alignment_utils.h.

Member Function Documentation

template<typename vector>

NVBIO_FORCEINLINE NVBIO_DEVICE void nvbio::bowtie2::cuda::detail::Backtracker< vector >::clip ( const uint32  l)

inline

Definition at line 134 of file alignment_utils.h.

template<typename vector>

NVBIO_FORCEINLINE NVBIO_DEVICE void nvbio::bowtie2::cuda::detail::Backtracker< vector >::push ( uint8  type)

inline

Definition at line 145 of file alignment_utils.h.

Member Data Documentation

template<typename vector>

uint32 nvbio::bowtie2::cuda::detail::Backtracker< vector >::capacity

Definition at line 167 of file alignment_utils.h.

template<typename vector>

vector nvbio::bowtie2::cuda::detail::Backtracker< vector >::out

Definition at line 164 of file alignment_utils.h.

template<typename vector>

uint8 nvbio::bowtie2::cuda::detail::Backtracker< vector >::prev

Definition at line 166 of file alignment_utils.h.

template<typename vector>

uint32 nvbio::bowtie2::cuda::detail::Backtracker< vector >::size

Definition at line 165 of file alignment_utils.h.

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The documentation for this struct was generated from the following file:

• E:/git/nvbio/nvBowtie/bowtie2/cuda/alignment_utils.h