Detailed description

a batch of alignment results on the CPU

Definition at line 86 of file output_batch.h.

Public Methods
void	readback (const DeviceOutputBatchSE)

	HostOutputBatchSE ()

Public Members
uint32	count

thrust::host_vector < io::Alignment >	alignments

HostCigarArray	cigar

HostMdsArray	mds

thrust::host_vector< uint8 >	mapq

thrust::host_vector< uint32 >	read_ids

const io::SequenceDataHost *	read_data

Constructor & Destructor Documentation

nvbio::io::HostOutputBatchSE::HostOutputBatchSE ( )

inline

constructor

Definition at line 106 of file output_batch.h.

void nvbio::io::HostOutputBatchSE::readback ( const DeviceOutputBatchSE batch)

Definition at line 38 of file output_batch.cpp.

thrust::host_vector<io::Alignment> nvbio::io::HostOutputBatchSE::alignments

Definition at line 92 of file output_batch.h.

HostCigarArray nvbio::io::HostOutputBatchSE::cigar

Definition at line 93 of file output_batch.h.

uint32 nvbio::io::HostOutputBatchSE::count

Definition at line 89 of file output_batch.h.

thrust::host_vector<uint8> nvbio::io::HostOutputBatchSE::mapq

Definition at line 95 of file output_batch.h.

HostMdsArray nvbio::io::HostOutputBatchSE::mds

Definition at line 94 of file output_batch.h.

const io::SequenceDataHost* nvbio::io::HostOutputBatchSE::read_data

Definition at line 99 of file output_batch.h.

thrust::host_vector<uint32> nvbio::io::HostOutputBatchSE::read_ids

Definition at line 96 of file output_batch.h.

The documentation for this struct was generated from the following files: