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nvbio::io::HostOutputBatchSE Struct Reference

Detailed description

a batch of alignment results on the CPU

Definition at line 86 of file output_batch.h.

#include <output_batch.h>

Public Methods

void readback (const DeviceOutputBatchSE)
 HostOutputBatchSE ()

Public Members

uint32 count
< io::Alignment
HostCigarArray cigar
HostMdsArray mds
thrust::host_vector< uint8mapq
thrust::host_vector< uint32read_ids
const io::SequenceDataHostread_data

Constructor & Destructor Documentation

nvbio::io::HostOutputBatchSE::HostOutputBatchSE ( )


Definition at line 106 of file output_batch.h.

Member Function Documentation

void nvbio::io::HostOutputBatchSE::readback ( const DeviceOutputBatchSE  batch)

Definition at line 38 of file output_batch.cpp.

Member Data Documentation

thrust::host_vector<io::Alignment> nvbio::io::HostOutputBatchSE::alignments

Definition at line 92 of file output_batch.h.

HostCigarArray nvbio::io::HostOutputBatchSE::cigar

Definition at line 93 of file output_batch.h.

uint32 nvbio::io::HostOutputBatchSE::count

Definition at line 89 of file output_batch.h.

thrust::host_vector<uint8> nvbio::io::HostOutputBatchSE::mapq

Definition at line 95 of file output_batch.h.

HostMdsArray nvbio::io::HostOutputBatchSE::mds

Definition at line 94 of file output_batch.h.

const io::SequenceDataHost* nvbio::io::HostOutputBatchSE::read_data

Definition at line 99 of file output_batch.h.

thrust::host_vector<uint32> nvbio::io::HostOutputBatchSE::read_ids

Definition at line 96 of file output_batch.h.

The documentation for this struct was generated from the following files: