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Public Methods | Public Members | List of all members
nvbio::io::SNPDatabase Struct Reference

Detailed description

Definition at line 60 of file vcf.h.

#include <vcf.h>

Public Methods

 SNPDatabase ()

Public Members

std::vector< std::string > reference_sequence_names
nvbio::vector< host_tag, uint2 > sequence_positions
nvbio::PackedVector< host_tag, 4 > reference_sequences
nvbio::PackedVector< host_tag, 4 > variants
nvbio::vector< host_tag,
nvbio::vector< host_tag, uint8variant_qualities

Constructor & Destructor Documentation

nvbio::io::SNPDatabase::SNPDatabase ( )

Definition at line 81 of file vcf.h.

Member Data Documentation

nvbio::vector<host_tag, SNP_sequence_index> nvbio::io::SNPDatabase::ref_variant_index

Definition at line 76 of file vcf.h.

std::vector<std::string> nvbio::io::SNPDatabase::reference_sequence_names

Definition at line 65 of file vcf.h.

nvbio::PackedVector<host_tag, 4> nvbio::io::SNPDatabase::reference_sequences

Definition at line 72 of file vcf.h.

nvbio::vector<host_tag, uint2> nvbio::io::SNPDatabase::sequence_positions

Definition at line 69 of file vcf.h.

nvbio::vector<host_tag, uint8> nvbio::io::SNPDatabase::variant_qualities

Definition at line 79 of file vcf.h.

nvbio::PackedVector<host_tag, 4> nvbio::io::SNPDatabase::variants

Definition at line 74 of file vcf.h.

The documentation for this struct was generated from the following file: