NVBIO: nvbio::mem::split_mem_functor< index_type, string_set_type > Struct Template Reference

Detailed description

template< typename index_type, typename string_set_type>
struct nvbio::mem::split_mem_functor< index_type, string_set_type >

Definition at line 638 of file mem_inl.h.

#include <mem_inl.h>

Public Types
typedef index_type::index_type	coord_type

typedef index_type::range_type	range_type

typedef MEMRange< coord_type >	mem_type

Public Methods
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE	split_mem_functor (const index_type _f_index, const index_type _r_index, const string_set_type _string_set, const uint32 _split_len, const uint32 _split_width, const uint32 _min_intv, const uint32 _max_intv, const uint32 _min_span, VectorArrayView< mem_type > _in_mem_arrays, VectorArrayView< mem_type > _out_mem_arrays)

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE void	operator() (const uint32 string_id) const

Public Members
const index_type	f_index

const index_type	r_index

const string_set_type	string_set

const uint32	split_len

const uint32	split_width

const uint32	min_intv

const uint32	max_intv

const uint32	min_span

const VectorArrayView< mem_type >	in_mem_arrays

VectorArrayView< mem_type >	out_mem_arrays

Member Typedef Documentation

template<typename index_type , typename string_set_type >

typedef index_type::index_type nvbio::mem::split_mem_functor< index_type, string_set_type >::coord_type

Definition at line 640 of file mem_inl.h.

template<typename index_type , typename string_set_type >

typedef MEMRange<coord_type> nvbio::mem::split_mem_functor< index_type, string_set_type >::mem_type

Definition at line 642 of file mem_inl.h.

template<typename index_type , typename string_set_type >

typedef index_type::range_type nvbio::mem::split_mem_functor< index_type, string_set_type >::range_type

Definition at line 641 of file mem_inl.h.

Constructor & Destructor Documentation

template<typename index_type , typename string_set_type >

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE nvbio::mem::split_mem_functor< index_type, string_set_type >::split_mem_functor	(	const index_type	_f_index,
		const index_type	_r_index,
		const string_set_type	_string_set,
		const uint32	_split_len,
		const uint32	_split_width,
		const uint32	_min_intv,
		const uint32	_max_intv,
		const uint32	_min_span,
		VectorArrayView< mem_type >	_in_mem_arrays,
		VectorArrayView< mem_type >	_out_mem_arrays
	)

inline

Definition at line 646 of file mem_inl.h.

Member Function Documentation

template<typename index_type , typename string_set_type >

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE void nvbio::mem::split_mem_functor< index_type, string_set_type >::operator() ( const uint32 string_id) const

inline

Definition at line 670 of file mem_inl.h.

Member Data Documentation

template<typename index_type , typename string_set_type >

const index_type nvbio::mem::split_mem_functor< index_type, string_set_type >::f_index

Definition at line 770 of file mem_inl.h.

template<typename index_type , typename string_set_type >

const VectorArrayView<mem_type> nvbio::mem::split_mem_functor< index_type, string_set_type >::in_mem_arrays

Definition at line 778 of file mem_inl.h.

template<typename index_type , typename string_set_type >

const uint32 nvbio::mem::split_mem_functor< index_type, string_set_type >::max_intv

Definition at line 776 of file mem_inl.h.

template<typename index_type , typename string_set_type >

const uint32 nvbio::mem::split_mem_functor< index_type, string_set_type >::min_intv

Definition at line 775 of file mem_inl.h.

template<typename index_type , typename string_set_type >

const uint32 nvbio::mem::split_mem_functor< index_type, string_set_type >::min_span

Definition at line 777 of file mem_inl.h.

template<typename index_type , typename string_set_type >

VectorArrayView<mem_type> nvbio::mem::split_mem_functor< index_type, string_set_type >::out_mem_arrays

mutable

Definition at line 779 of file mem_inl.h.

template<typename index_type , typename string_set_type >

const index_type nvbio::mem::split_mem_functor< index_type, string_set_type >::r_index

Definition at line 771 of file mem_inl.h.

template<typename index_type , typename string_set_type >

const uint32 nvbio::mem::split_mem_functor< index_type, string_set_type >::split_len

Definition at line 773 of file mem_inl.h.

template<typename index_type , typename string_set_type >

const uint32 nvbio::mem::split_mem_functor< index_type, string_set_type >::split_width

Definition at line 774 of file mem_inl.h.

template<typename index_type , typename string_set_type >

const string_set_type nvbio::mem::split_mem_functor< index_type, string_set_type >::string_set

Definition at line 772 of file mem_inl.h.

The documentation for this struct was generated from the following file:

E:/git/nvbio/nvbio/fmindex/mem_inl.h