NVBIO: nvbio::priv::DCS_string_suffix_less< SYMBOL_SIZE, string_type > Struct Template Reference

Detailed description

template< uint32 SYMBOL_SIZE, typename string_type>
struct nvbio::priv::DCS_string_suffix_less< SYMBOL_SIZE, string_type >

A binary functor comparing two suffixes lexicographically using a Difference Cover Sample

Definition at line 247 of file dcs.h.

#include <dcs.h>

Public Types
typedef uint32	first_argument_type

typedef uint32	second_argument_type

typedef uint32	result_type

Public Methods
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE	DCS_string_suffix_less (const uint64 _string_len, const string_type _string, const DCSView _dcs)

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE result_type	operator() (const uint64 suffix_idx1, const uint64 suffix_idx2) const

Public Members
const uint64	string_len

const string_type	string

const DCSView	dcs

Member Typedef Documentation

template<uint32 SYMBOL_SIZE, typename string_type >

typedef uint32 nvbio::priv::DCS_string_suffix_less< SYMBOL_SIZE, string_type >::first_argument_type

Definition at line 249 of file dcs.h.

template<uint32 SYMBOL_SIZE, typename string_type >

typedef uint32 nvbio::priv::DCS_string_suffix_less< SYMBOL_SIZE, string_type >::result_type

Definition at line 251 of file dcs.h.

template<uint32 SYMBOL_SIZE, typename string_type >

typedef uint32 nvbio::priv::DCS_string_suffix_less< SYMBOL_SIZE, string_type >::second_argument_type

Definition at line 250 of file dcs.h.

Constructor & Destructor Documentation

template<uint32 SYMBOL_SIZE, typename string_type >

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE nvbio::priv::DCS_string_suffix_less< SYMBOL_SIZE, string_type >::DCS_string_suffix_less	(	const uint64	_string_len,
		const string_type	_string,
		const DCSView	_dcs
	)

inline

constructor

Definition at line 256 of file dcs.h.

Member Function Documentation

template<uint32 SYMBOL_SIZE, typename string_type >

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE result_type nvbio::priv::DCS_string_suffix_less< SYMBOL_SIZE, string_type >::operator()	(	const uint64	suffix_idx1,
		const uint64	suffix_idx2
	)		const

inline

return true if the first suffix is lexicographically smaller than the second, false otherwise

Definition at line 267 of file dcs.h.

Member Data Documentation

template<uint32 SYMBOL_SIZE, typename string_type >

const DCSView nvbio::priv::DCS_string_suffix_less< SYMBOL_SIZE, string_type >::dcs

Definition at line 353 of file dcs.h.

template<uint32 SYMBOL_SIZE, typename string_type >

const string_type nvbio::priv::DCS_string_suffix_less< SYMBOL_SIZE, string_type >::string

Definition at line 352 of file dcs.h.

template<uint32 SYMBOL_SIZE, typename string_type >

const uint64 nvbio::priv::DCS_string_suffix_less< SYMBOL_SIZE, string_type >::string_len

Definition at line 351 of file dcs.h.

The documentation for this struct was generated from the following file:

E:/git/nvbio/nvbio/sufsort/dcs.h