nvbio::priv::DollarExtractor Struct Reference

Detailed description

Collect dollar symbols out of a BWT + SA block

Definition at line 1992 of file sufsort_priv.h.

#include <sufsort_priv.h>

Public Methods
	DollarExtractor ()
uint32	extract (const uint32 n_suffixes, const uint8 *h_bwt, const uint8 *d_bwt, const uint2 *h_suffixes, const uint2 *d_suffixes, const uint32 *d_indices)

Public Members
uint64	offset
uint32	n_dollars
thrust::device_vector< uint64 >	d_dollar_ranks
thrust::device_vector< uint32 >	d_dollar_indices
thrust::device_vector< uint64 >	d_dollars
thrust::host_vector< uint64 >	h_dollar_ranks
thrust::host_vector< uint64 >	h_dollars
thrust::device_vector< uint8 >	d_temp_storage

Constructor & Destructor Documentation

nvbio::priv::DollarExtractor::DollarExtractor ( )

inline

constructor

Definition at line 1996 of file sufsort_priv.h.

Member Function Documentation

uint32 nvbio::priv::DollarExtractor::extract	(	const uint32	n_suffixes,
		const uint8 *	h_bwt,
		const uint8 *	d_bwt,
		const uint2 *	h_suffixes,
		const uint2 *	d_suffixes,
		const uint32 *	d_indices
	)

process a batch of BWT symbols

Member Data Documentation

thrust::device_vector<uint32> nvbio::priv::DollarExtractor::d_dollar_indices

Definition at line 2014 of file sufsort_priv.h.

thrust::device_vector<uint64> nvbio::priv::DollarExtractor::d_dollar_ranks

Definition at line 2013 of file sufsort_priv.h.

thrust::device_vector<uint64> nvbio::priv::DollarExtractor::d_dollars

Definition at line 2015 of file sufsort_priv.h.

thrust::device_vector<uint8> nvbio::priv::DollarExtractor::d_temp_storage

Definition at line 2018 of file sufsort_priv.h.

thrust::host_vector<uint64> nvbio::priv::DollarExtractor::h_dollar_ranks

Definition at line 2016 of file sufsort_priv.h.

thrust::host_vector<uint64> nvbio::priv::DollarExtractor::h_dollars

Definition at line 2017 of file sufsort_priv.h.

uint32 nvbio::priv::DollarExtractor::n_dollars

Definition at line 2011 of file sufsort_priv.h.

uint64 nvbio::priv::DollarExtractor::offset

Definition at line 2010 of file sufsort_priv.h.

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The documentation for this struct was generated from the following file:

• E:/git/nvbio/nvbio/sufsort/sufsort_priv.h