NVBIO: nvbio::priv::global_set_suffix_word_functor< SYMBOL_SIZE, WORD_BITS, DOLLAR_BITS, string_set_type, word_type > Struct Template Reference

Detailed description

template< uint32 SYMBOL_SIZE, uint32 WORD_BITS, uint32 DOLLAR_BITS, typename string_set_type, typename word_type>
struct nvbio::priv::global_set_suffix_word_functor< SYMBOL_SIZE, WORD_BITS, DOLLAR_BITS, string_set_type, word_type >

A functor fetching the w'th word worth of 2-bit symbols from the i-th suffix in a set

Definition at line 674 of file sufsort_priv.h.

#include <sufsort_priv.h>

Public Types
typedef uint32	argument_type

typedef word_type	result_type

Public Methods
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE	global_set_suffix_word_functor (const string_set_type _string_set, const uint32 _cum_lengths, const uint32 _string_ids, const uint32 _w)

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE result_type	operator() (const uint32 global_suffix_idx) const

Public Members
local_set_suffix_word_functor < SYMBOL_SIZE, WORD_BITS, DOLLAR_BITS, string_set_type, word_type >	word_functor

localize_suffix_functor	localizer

Member Typedef Documentation

template<uint32 SYMBOL_SIZE, uint32 WORD_BITS, uint32 DOLLAR_BITS, typename string_set_type , typename word_type >

typedef uint32 nvbio::priv::global_set_suffix_word_functor< SYMBOL_SIZE, WORD_BITS, DOLLAR_BITS, string_set_type, word_type >::argument_type

Definition at line 676 of file sufsort_priv.h.

template<uint32 SYMBOL_SIZE, uint32 WORD_BITS, uint32 DOLLAR_BITS, typename string_set_type , typename word_type >

typedef word_type nvbio::priv::global_set_suffix_word_functor< SYMBOL_SIZE, WORD_BITS, DOLLAR_BITS, string_set_type, word_type >::result_type

Definition at line 677 of file sufsort_priv.h.

Constructor & Destructor Documentation

template<uint32 SYMBOL_SIZE, uint32 WORD_BITS, uint32 DOLLAR_BITS, typename string_set_type , typename word_type >

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE nvbio::priv::global_set_suffix_word_functor< SYMBOL_SIZE, WORD_BITS, DOLLAR_BITS, string_set_type, word_type >::global_set_suffix_word_functor	(	const string_set_type	_string_set,
		const uint32 *	_cum_lengths,
		const uint32 *	_string_ids,
		const uint32	_w
	)

inline

constructor

Definition at line 682 of file sufsort_priv.h.

Member Function Documentation

template<uint32 SYMBOL_SIZE, uint32 WORD_BITS, uint32 DOLLAR_BITS, typename string_set_type , typename word_type >

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE result_type nvbio::priv::global_set_suffix_word_functor< SYMBOL_SIZE, WORD_BITS, DOLLAR_BITS, string_set_type, word_type >::operator() ( const uint32 global_suffix_idx) const

inline

return the w'th word of the i-th string

Definition at line 689 of file sufsort_priv.h.

Member Data Documentation

template<uint32 SYMBOL_SIZE, uint32 WORD_BITS, uint32 DOLLAR_BITS, typename string_set_type , typename word_type >

localize_suffix_functor nvbio::priv::global_set_suffix_word_functor< SYMBOL_SIZE, WORD_BITS, DOLLAR_BITS, string_set_type, word_type >::localizer

Definition at line 695 of file sufsort_priv.h.

template<uint32 SYMBOL_SIZE, uint32 WORD_BITS, uint32 DOLLAR_BITS, typename string_set_type , typename word_type >

local_set_suffix_word_functor<SYMBOL_SIZE,WORD_BITS,DOLLAR_BITS,string_set_type,word_type> nvbio::priv::global_set_suffix_word_functor< SYMBOL_SIZE, WORD_BITS, DOLLAR_BITS, string_set_type, word_type >::word_functor

Definition at line 694 of file sufsort_priv.h.

The documentation for this struct was generated from the following file:

E:/git/nvbio/nvbio/sufsort/sufsort_priv.h