nvbio::priv::string_set_bwt_functor< string_set_type > Struct Template Reference

Detailed description

template< typename string_set_type>
struct nvbio::priv::string_set_bwt_functor< string_set_type >

given a string set, return the symbol preceding each of its suffixes, or 255u to mark the special $ symbol used for the first suffix.

Definition at line 890 of file sufsort_priv.h.

#include <sufsort_priv.h>

Public Types
typedef uint2	argument_type
typedef uint8	result_type

Public Methods
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE	string_set_bwt_functor (const string_set_type _string_set)
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE result_type	operator() (const argument_type local_suffix_idx) const
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE result_type	operator() (const uint32 string_idx) const

Public Members
const string_set_type	string_set

Member Typedef Documentation

template<typename string_set_type>

typedef uint2 nvbio::priv::string_set_bwt_functor< string_set_type >::argument_type

Definition at line 892 of file sufsort_priv.h.

template<typename string_set_type>

typedef uint8 nvbio::priv::string_set_bwt_functor< string_set_type >::result_type

Definition at line 893 of file sufsort_priv.h.

Constructor & Destructor Documentation

template<typename string_set_type>

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE nvbio::priv::string_set_bwt_functor< string_set_type >::string_set_bwt_functor ( const string_set_type  _string_set)

inline

constructor

Definition at line 898 of file sufsort_priv.h.

Member Function Documentation

template<typename string_set_type>

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE result_type nvbio::priv::string_set_bwt_functor< string_set_type >::operator() ( const argument_type  local_suffix_idx) const

inline

return the symbol preceding the given suffix

Definition at line 904 of file sufsort_priv.h.

template<typename string_set_type>

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE result_type nvbio::priv::string_set_bwt_functor< string_set_type >::operator() ( const uint32  string_idx) const

inline

return the last symbol of a given string

Definition at line 919 of file sufsort_priv.h.

Member Data Documentation

template<typename string_set_type>

const string_set_type nvbio::priv::string_set_bwt_functor< string_set_type >::string_set

Definition at line 928 of file sufsort_priv.h.

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The documentation for this struct was generated from the following file:

• E:/git/nvbio/nvbio/sufsort/sufsort_priv.h