nvbio::uniform_seeds_functor< index_type > Struct Template Reference

Detailed description

template< typename index_type = uint32>
struct nvbio::uniform_seeds_functor< index_type >

a Seeding Functor returning seeds sampled at regular intervals

Definition at line 97 of file seeds.h.

#include <seeds.h>

Public Types
typedef index_type	argument_type
typedef index_type	result_type
typedef vector_type < index_type, 2u >::type	range_type

Public Methods
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE	uniform_seeds_functor (const uint32 _len, const uint32 _interval)
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE index_type	operator() (const index_type length) const
NVBIO_FORCEINLINE NVBIO_HOST_DEVICE range_type	seed (const uint32 length, const index_type i) const

Public Members
const uint32	len
	the seed length More...
const uint32	interval
	the sampling interval More...

Member Typedef Documentation

template<typename index_type = uint32>

typedef index_type nvbio::uniform_seeds_functor< index_type >::argument_type

Definition at line 99 of file seeds.h.

template<typename index_type = uint32>

typedef vector_type<index_type,2u>::type nvbio::uniform_seeds_functor< index_type >::range_type

Definition at line 101 of file seeds.h.

template<typename index_type = uint32>

typedef index_type nvbio::uniform_seeds_functor< index_type >::result_type

Definition at line 100 of file seeds.h.

Constructor & Destructor Documentation

template<typename index_type = uint32>

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE nvbio::uniform_seeds_functor< index_type >::uniform_seeds_functor ( const uint32  _len, const uint32  _interval  )

inline

constructor

Parameters

_interval

the sampling interval

Definition at line 107 of file seeds.h.

Member Function Documentation

template<typename index_type = uint32>

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE index_type nvbio::uniform_seeds_functor< index_type >::operator() ( const index_type  length) const

inline

return the number of seeds for a given string length

Definition at line 112 of file seeds.h.

template<typename index_type = uint32>

NVBIO_FORCEINLINE NVBIO_HOST_DEVICE range_type nvbio::uniform_seeds_functor< index_type >::seed ( const uint32  length, const index_type  i  ) const

inline

return the coordinate of the i-th seed

Definition at line 123 of file seeds.h.

Member Data Documentation

template<typename index_type = uint32>

const uint32 nvbio::uniform_seeds_functor< index_type >::interval

the sampling interval

Definition at line 126 of file seeds.h.

template<typename index_type = uint32>

const uint32 nvbio::uniform_seeds_functor< index_type >::len

the seed length

Definition at line 125 of file seeds.h.

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The documentation for this struct was generated from the following file:

• E:/git/nvbio/nvbio/strings/seeds.h