tabix.c File Reference

#include <stdio.h>
#include <stdlib.h>
#include <unistd.h>
#include <string.h>
#include <getopt.h>
#include <sys/types.h>
#include <sys/stat.h>
#include <errno.h>
#include "htslib/tbx.h"
#include "htslib/sam.h"
#include "htslib/vcf.h"
#include "htslib/kseq.h"
#include "htslib/bgzf.h"
#include "htslib/hts.h"

Go to the source code of this file.

Classes
struct	args_t

Macros
#define	IS_GFF   (1<<0)
#define	IS_BED   (1<<1)
#define	IS_SAM   (1<<2)
#define	IS_VCF   (1<<3)
#define	IS_BCF   (1<<4)
#define	IS_BAM   (1<<5)
#define	IS_TXT   (IS_GFF|IS_BED|IS_SAM|IS_VCF)
#define	PRINT_HEADER   1
#define	HEADER_ONLY   2

Functions
int	file_type (const char *fname)
int	reheader_file (const char *fname, const char *header, int ftype, tbx_conf_t *conf)
int	main (int argc, char *argv[])

Macro Definition Documentation

#define HEADER_ONLY   2

Definition at line 54 of file tabix.c.

#define IS_BAM   (1<<5)

Definition at line 37 of file tabix.c.

#define IS_BCF   (1<<4)

Definition at line 36 of file tabix.c.

#define IS_BED   (1<<1)

Definition at line 33 of file tabix.c.

#define IS_GFF   (1<<0)

Definition at line 32 of file tabix.c.

#define IS_SAM   (1<<2)

Definition at line 34 of file tabix.c.

#define IS_TXT   (IS_GFF|IS_BED|IS_SAM|IS_VCF)

Definition at line 38 of file tabix.c.

#define IS_VCF   (1<<3)

Definition at line 35 of file tabix.c.

#define PRINT_HEADER   1

Definition at line 53 of file tabix.c.

Function Documentation

int file_type

(

const char *

fname)

Definition at line 40 of file tabix.c.

int main	(	int	argc,
		char *	argv[]
	)

Definition at line 255 of file tabix.c.

int reheader_file	(	const char *	fname,
		const char *	header,
		int	ftype,
		tbx_conf_t *	conf
	)

Definition at line 159 of file tabix.c.