Output

Detailed Description

Classes
struct	nvbio::io::OutputFile
struct	nvbio::io::BNT
struct	nvbio::io::DeviceCigarArray
struct	nvbio::io::HostCigarArray

Typedefs
typedef nvbio::HostVectorArray < uint8 >	nvbio::io::HostMdsArray

Enumerations
enum	nvbio::io::AlignmentType { nvbio::io::SINGLE_END, nvbio::io::PAIRED_END }
enum	nvbio::io::AlignmentMate { nvbio::io::MATE_1 = 0, nvbio::io::MATE_2 = 1 }
enum	nvbio::io::AlignmentScore { nvbio::io::BEST_SCORE, nvbio::io::SECOND_BEST_SCORE }

Typedef Documentation

typedef nvbio::HostVectorArray<uint8> nvbio::io::HostMdsArray

The type for the MDS array in the host

Definition at line 133 of file output_types.h.

Enumeration Type Documentation

enum nvbio::io::AlignmentMate

Helper enum to identify a mate in an alignment.

Enumerator
MATE_1
MATE_2

Definition at line 97 of file output_types.h.

enum nvbio::io::AlignmentScore

Helper enum to identify a scoring pass.

Enumerator
BEST_SCORE
SECOND_BEST_SCORE

Definition at line 104 of file output_types.h.

enum nvbio::io::AlignmentType

Helper enum to identify the type of alignment we're doing

Enumerator
SINGLE_END
PAIRED_END

Definition at line 90 of file output_types.h.