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seed_hit_deque_array.h File Reference
#include <nvBowtie/bowtie2/cuda/defs.h>
#include <nvBowtie/bowtie2/cuda/seed_hit.h>
#include <nvbio/basic/cuda/pingpong_queues.h>
#include <nvbio/basic/cuda/arch.h>
#include <nvbio/basic/thrust_view.h>
#include <nvbio/basic/priority_deque.h>
#include <nvbio/basic/sum_tree.h>
#include <nvbio/basic/vector_view.h>
#include <nvbio/basic/vector.h>
#include <algorithm>
#include <nvBowtie/bowtie2/cuda/seed_hit_deque_array_inl.h>

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Classes

struct  nvbio::bowtie2::cuda::SeedHitDequeReference< SeedHitDequeArrayType >
 
struct  nvbio::bowtie2::cuda::SeedHitDequeArrayDeviceStorage
 
struct  nvbio::bowtie2::cuda::SeedHitDequeArrayHostStorage
 
struct  nvbio::bowtie2::cuda::SeedHitDequeArray
 
struct  nvbio::bowtie2::cuda::SeedHitDequeArrayDeviceView
 
struct  nvbio::bowtie2::cuda::SeedHitDequeReference< SeedHitDequeArrayType >
 

Namespaces

 nvbio
 Define a vector_view POD type and plain_view() for std::vector.
 
 nvbio::bowtie2
 
 nvbio::bowtie2::cuda