_bcf_sweep_t Struct Reference

Detailed description

Definition at line 7 of file vcf_sweep.c.

Public Members
htsFile *	file
bcf_hdr_t *	hdr
BGZF *	fp
int	direction
int	block_size
bcf1_t *	rec
int	nrec
int	mrec
int	lrid
int	lpos
int	lnals
int	lals_len
int	mlals
char *	lals
uint64_t *	idx
int	iidx
int	nidx
int	midx
int	idx_done

Member Data Documentation

int _bcf_sweep_t::block_size

Definition at line 14 of file vcf_sweep.c.

int _bcf_sweep_t::direction

Definition at line 13 of file vcf_sweep.c.

htsFile* _bcf_sweep_t::file

Definition at line 9 of file vcf_sweep.c.

BGZF* _bcf_sweep_t::fp

Definition at line 11 of file vcf_sweep.c.

bcf_hdr_t* _bcf_sweep_t::hdr

Definition at line 10 of file vcf_sweep.c.

uint64_t* _bcf_sweep_t::idx

Definition at line 20 of file vcf_sweep.c.

int _bcf_sweep_t::idx_done

Definition at line 22 of file vcf_sweep.c.

int _bcf_sweep_t::iidx

Definition at line 21 of file vcf_sweep.c.

char* _bcf_sweep_t::lals

Definition at line 18 of file vcf_sweep.c.

int _bcf_sweep_t::lals_len

Definition at line 17 of file vcf_sweep.c.

int _bcf_sweep_t::lnals

Definition at line 17 of file vcf_sweep.c.

int _bcf_sweep_t::lpos

Definition at line 17 of file vcf_sweep.c.

int _bcf_sweep_t::lrid

Definition at line 17 of file vcf_sweep.c.

int _bcf_sweep_t::midx

Definition at line 21 of file vcf_sweep.c.

int _bcf_sweep_t::mlals

Definition at line 17 of file vcf_sweep.c.

int _bcf_sweep_t::mrec

Definition at line 16 of file vcf_sweep.c.

int _bcf_sweep_t::nidx

Definition at line 21 of file vcf_sweep.c.

int _bcf_sweep_t::nrec

Definition at line 16 of file vcf_sweep.c.

bcf1_t* _bcf_sweep_t::rec

Definition at line 15 of file vcf_sweep.c.

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The documentation for this struct was generated from the following file:

• E:/git/nvbio/contrib/htslib/vcf_sweep.c