cram_record Struct Reference

Detailed description

Definition at line 373 of file cram_structs.h.

#include <cram_structs.h>

Public Members
struct cram_slice *	s
int32_t	ref_id
int32_t	flags
int32_t	cram_flags
int32_t	len
int32_t	apos
int32_t	rg
int32_t	name
int32_t	name_len
int32_t	mate_line
int32_t	mate_ref_id
int32_t	mate_pos
int32_t	tlen
int32_t	ntags
int32_t	aux
int32_t	aux_size
int32_t	tn
int	TL
int32_t	seq
int32_t	qual
int32_t	cigar
int32_t	ncigar
int32_t	aend
int32_t	mqual
int32_t	feature
int32_t	nfeature
int32_t	mate_flags

Member Data Documentation

int32_t cram_record::aend

Definition at line 404 of file cram_structs.h.

int32_t cram_record::apos

Definition at line 380 of file cram_structs.h.

int32_t cram_record::aux

Definition at line 391 of file cram_structs.h.

int32_t cram_record::aux_size

Definition at line 392 of file cram_structs.h.

int32_t cram_record::cigar

Definition at line 402 of file cram_structs.h.

int32_t cram_record::cram_flags

Definition at line 378 of file cram_structs.h.

int32_t cram_record::feature

Definition at line 407 of file cram_structs.h.

int32_t cram_record::flags

Definition at line 377 of file cram_structs.h.

int32_t cram_record::len

Definition at line 379 of file cram_structs.h.

int32_t cram_record::mate_flags

Definition at line 409 of file cram_structs.h.

int32_t cram_record::mate_line

Definition at line 384 of file cram_structs.h.

int32_t cram_record::mate_pos

Definition at line 386 of file cram_structs.h.

int32_t cram_record::mate_ref_id

Definition at line 385 of file cram_structs.h.

int32_t cram_record::mqual

Definition at line 405 of file cram_structs.h.

int32_t cram_record::name

Definition at line 382 of file cram_structs.h.

int32_t cram_record::name_len

Definition at line 383 of file cram_structs.h.

int32_t cram_record::ncigar

Definition at line 403 of file cram_structs.h.

int32_t cram_record::nfeature

Definition at line 408 of file cram_structs.h.

int32_t cram_record::ntags

Definition at line 390 of file cram_structs.h.

int32_t cram_record::qual

Definition at line 401 of file cram_structs.h.

int32_t cram_record::ref_id

Definition at line 376 of file cram_structs.h.

int32_t cram_record::rg

Definition at line 381 of file cram_structs.h.

struct cram_slice* cram_record::s

Definition at line 374 of file cram_structs.h.

int32_t cram_record::seq

Definition at line 400 of file cram_structs.h.

int cram_record::TL

Definition at line 398 of file cram_structs.h.

int32_t cram_record::tlen

Definition at line 387 of file cram_structs.h.

int32_t cram_record::tn

Definition at line 396 of file cram_structs.h.

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The documentation for this struct was generated from the following file:

• E:/git/nvbio/contrib/htslib/cram/cram_structs.h