cram_slice Struct Reference

Detailed description

Definition at line 490 of file cram_structs.h.

#include <cram_structs.h>

Public Methods
	khash_t (m_s2i)*pair

Public Members
cram_block_slice_hdr *	hdr
cram_block *	hdr_block
cram_block **	block
cram_block **	block_by_id
int	last_apos
int	max_apos
uint64_t	id
cram_record *	crecs
uint32_t *	cigar
uint32_t	cigar_alloc
uint32_t	ncigar
cram_block *	name_blk
cram_block *	seqs_blk
cram_block *	qual_blk
cram_block *	aux_blk
cram_block *	base_blk
cram_block *	soft_blk
cram_feature *	features
int	nfeatures
int	afeatures
cram_block *	tn_blk
int	tn_id
string_alloc_t *	pair_keys
char *	ref
int	ref_start
int	ref_end
int	ref_id

Member Function Documentation

cram_slice::khash_t

(

m_s2i

)

Member Data Documentation

int cram_slice::afeatures

Definition at line 520 of file cram_structs.h.

cram_block* cram_slice::aux_blk

Definition at line 514 of file cram_structs.h.

cram_block* cram_slice::base_blk

Definition at line 515 of file cram_structs.h.

cram_block** cram_slice::block

Definition at line 493 of file cram_structs.h.

cram_block** cram_slice::block_by_id

Definition at line 494 of file cram_structs.h.

uint32_t* cram_slice::cigar

Definition at line 508 of file cram_structs.h.

uint32_t cram_slice::cigar_alloc

Definition at line 509 of file cram_structs.h.

cram_record* cram_slice::crecs

Definition at line 503 of file cram_structs.h.

cram_feature* cram_slice::features

Definition at line 518 of file cram_structs.h.

cram_block_slice_hdr* cram_slice::hdr

Definition at line 491 of file cram_structs.h.

cram_block* cram_slice::hdr_block

Definition at line 492 of file cram_structs.h.

uint64_t cram_slice::id

Definition at line 500 of file cram_structs.h.

int cram_slice::last_apos

Definition at line 497 of file cram_structs.h.

int cram_slice::max_apos

Definition at line 497 of file cram_structs.h.

cram_block* cram_slice::name_blk

Definition at line 511 of file cram_structs.h.

uint32_t cram_slice::ncigar

Definition at line 510 of file cram_structs.h.

int cram_slice::nfeatures

Definition at line 519 of file cram_structs.h.

string_alloc_t* cram_slice::pair_keys

Definition at line 531 of file cram_structs.h.

cram_block* cram_slice::qual_blk

Definition at line 513 of file cram_structs.h.

char* cram_slice::ref

Definition at line 534 of file cram_structs.h.

int cram_slice::ref_end

Definition at line 536 of file cram_structs.h.

int cram_slice::ref_id

Definition at line 542 of file cram_structs.h.

int cram_slice::ref_start

Definition at line 535 of file cram_structs.h.

cram_block* cram_slice::seqs_blk

Definition at line 512 of file cram_structs.h.

cram_block* cram_slice::soft_blk

Definition at line 516 of file cram_structs.h.

cram_block* cram_slice::tn_blk

Definition at line 527 of file cram_structs.h.

int cram_slice::tn_id

Definition at line 528 of file cram_structs.h.

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The documentation for this struct was generated from the following file:

• E:/git/nvbio/contrib/htslib/cram/cram_structs.h