nvbio::DCS Struct Reference

Detailed description

A data structure to hold a Difference Cover Sample

Definition at line 151 of file dcs.h.

#include <dcs.h>

Public Types
typedef DCSView	plain_view_type

Public Methods
template<uint32 QT>
void	init ()
uint32	estimate_sample_size (const uint64 string_len) const

Static Public Methods
template<uint32 QT>
static uint32	estimated_sample_size (const uint64 string_len)

Public Members
uint32	Q
	difference cover period More...
uint32	N
	difference cover quorum More...
thrust::device_vector< uint32 >	d_dc
	difference cover table More...
thrust::device_vector< uint32 >	d_lut
	the (i,j) -> l LUT More...
thrust::device_vector< uint32 >	d_pos
	the DC -> pos mapping More...
thrust::device_vector< uint8 >	d_bitmask
	difference cover bitmask More...
thrust::device_vector< uint32 >	d_ranks
	ordered DCS ranks More...

Member Typedef Documentation

typedef DCSView nvbio::DCS::plain_view_type

Definition at line 153 of file dcs.h.

Member Function Documentation

uint32 nvbio::DCS::estimate_sample_size ( const uint64  string_len) const

inline

estimate sample size

Definition at line 167 of file dcs.h.

template<uint32 QT>

static uint32 nvbio::DCS::estimated_sample_size ( const uint64  string_len)

inlinestatic

estimate sample size

Definition at line 163 of file dcs.h.

template<uint32 QT>

void nvbio::DCS::init

(

void

)

constructor

Definition at line 140 of file dcs_inl.h.

Member Data Documentation

thrust::device_vector<uint8> nvbio::DCS::d_bitmask

difference cover bitmask

Definition at line 175 of file dcs.h.

thrust::device_vector<uint32> nvbio::DCS::d_dc

difference cover table

Definition at line 172 of file dcs.h.

thrust::device_vector<uint32> nvbio::DCS::d_lut

the (i,j) -> l LUT

Definition at line 173 of file dcs.h.

thrust::device_vector<uint32> nvbio::DCS::d_pos

the DC -> pos mapping

Definition at line 174 of file dcs.h.

thrust::device_vector<uint32> nvbio::DCS::d_ranks

ordered DCS ranks

Definition at line 176 of file dcs.h.

uint32 nvbio::DCS::N

difference cover quorum

Definition at line 170 of file dcs.h.

uint32 nvbio::DCS::Q

difference cover period

Definition at line 169 of file dcs.h.

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The documentation for this struct was generated from the following files:

• E:/git/nvbio/nvbio/sufsort/dcs.h
• E:/git/nvbio/nvbio/sufsort/dcs_inl.h