Detailed description

Consume a stream of banded alignment traceback jobs

Template Parameters

stream_type	the stream of alignment jobs
algorithm_type	a Batch Scheduler specifier

Definition at line 464 of file batched.h.

#include <batched.h>

Public Methods
void	enact (stream_type stream, uint64 temp_size=0u, uint8 *temp=NULL)

Static Public Methods
static uint64	min_temp_storage (const uint32 max_pattern_len, const uint32 max_text_len, const uint32 stream_size)

static uint64	max_temp_storage (const uint32 max_pattern_len, const uint32 max_text_len, const uint32 stream_size)

Member Function Documentation

template<uint32 BAND_LEN, uint32 CHECKPOINTS, typename stream_type, typename algorithm_type = DeviceThreadScheduler>

void nvbio::aln::BatchedBandedAlignmentTraceback< BAND_LEN, CHECKPOINTS, stream_type, algorithm_type >::enact	(	stream_type	stream,
		uint64	temp_size = `0u`,
		uint8 *	temp = `NULL`
	)

enact the batch execution

template<uint32 BAND_LEN, uint32 CHECKPOINTS, typename stream_type, typename algorithm_type = DeviceThreadScheduler>

static uint64 nvbio::aln::BatchedBandedAlignmentTraceback< BAND_LEN, CHECKPOINTS, stream_type, algorithm_type >::max_temp_storage	(	const uint32	max_pattern_len,
		const uint32	max_text_len,
		const uint32	stream_size
	)

static

return the maximum number of bytes required by the algorithm

template<uint32 BAND_LEN, uint32 CHECKPOINTS, typename stream_type, typename algorithm_type = DeviceThreadScheduler>

static uint64 nvbio::aln::BatchedBandedAlignmentTraceback< BAND_LEN, CHECKPOINTS, stream_type, algorithm_type >::min_temp_storage	(	const uint32	max_pattern_len,
		const uint32	max_text_len,
		const uint32	stream_size
	)

static

return the minimum number of bytes required by the algorithm

The documentation for this struct was generated from the following file: