Detailed description

a batch of alignment results on the CPU

Definition at line 111 of file output_batch.h.

Public Methods
void	readback (const DeviceOutputBatchSE, const AlignmentMate mate)

	HostOutputBatchPE ()

Public Members
uint32	count

thrust::host_vector < io::Alignment >	alignments [2]

HostCigarArray	cigar [2]

HostMdsArray	mds [2]

thrust::host_vector< uint8 >	mapq [2]

thrust::host_vector< uint32 >	read_ids

const io::SequenceDataHost *	read_data [2]

Constructor & Destructor Documentation

nvbio::io::HostOutputBatchPE::HostOutputBatchPE ( )

inline

constructor

Definition at line 131 of file output_batch.h.

void nvbio::io::HostOutputBatchPE::readback	(	const DeviceOutputBatchSE	batch,
		const AlignmentMate	mate
	)

Definition at line 48 of file output_batch.cpp.

thrust::host_vector<io::Alignment> nvbio::io::HostOutputBatchPE::alignments[2]

Definition at line 117 of file output_batch.h.

HostCigarArray nvbio::io::HostOutputBatchPE::cigar[2]

Definition at line 118 of file output_batch.h.

uint32 nvbio::io::HostOutputBatchPE::count

Definition at line 114 of file output_batch.h.

thrust::host_vector<uint8> nvbio::io::HostOutputBatchPE::mapq[2]

Definition at line 120 of file output_batch.h.

HostMdsArray nvbio::io::HostOutputBatchPE::mds[2]

Definition at line 119 of file output_batch.h.

const io::SequenceDataHost* nvbio::io::HostOutputBatchPE::read_data[2]

Definition at line 124 of file output_batch.h.

thrust::host_vector<uint32> nvbio::io::HostOutputBatchPE::read_ids

Definition at line 121 of file output_batch.h.

The documentation for this struct was generated from the following files: