Detailed description

Definition at line 51 of file bam.h.

#include <bam.h>

Inheritance diagram for nvbio::io::ReadDataFile_BAM:

Public Methods
	ReadDataFile_BAM (const char *read_file_name, const uint32 max_reads, const uint32 max_read_len, const ReadEncoding flags)

virtual int	nextChunk (ReadDataRAM *output, uint32 max_reads, uint32 max_bps)

bool	init (void)

Public Methods inherited from nvbio::io::ReadDataFile
virtual	~ReadDataFile ()

virtual ReadData *	next (const uint32 batch_size, const uint32 batch_bps)

virtual bool	is_ok (void)

Public Methods inherited from nvbio::io::ReadDataStream
	ReadDataStream (uint32 truncate_read_len=uint32(-1))

virtual	~ReadDataStream ()

Additional Inherited Members
Public Types inherited from nvbio::io::ReadDataFile
enum	FileState { FILE_NOT_READY, FILE_OPEN_FAILED, FILE_OK, FILE_EOF, FILE_STREAM_ERROR, FILE_PARSE_ERROR }

Public Members inherited from nvbio::io::ReadDataStream
uint32	m_truncate_read_len

Static Public Members inherited from nvbio::io::ReadDataFile
static const uint32	LONG_READ = 32*1024

Proteced Methods inherited from nvbio::io::ReadDataFile
	ReadDataFile (const uint32 max_reads, const uint32 truncate_read_len, const ReadEncoding flags)

Protected Members inherited from nvbio::io::ReadDataFile
uint32	m_max_reads

ReadEncoding	m_flags

uint32	m_loaded

FileState	m_file_state

The documentation for this struct was generated from the following files:

Public Methods