sequence_priv.cpp File Reference

#include <nvbio/io/sequence/sequence_priv.h>
#include <nvbio/io/sequence/sequence_encoder.h>
#include <nvbio/io/sequence/sequence_fasta.h>
#include <nvbio/io/sequence/sequence_fastq.h>
#include <nvbio/io/sequence/sequence_txt.h>
#include <nvbio/io/sequence/sequence_sam.h>
#include <nvbio/io/sequence/sequence_bam.h>
#include <nvbio/io/sequence/sequence_pac.h>
#include <nvbio/basic/shared_pointer.h>

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Namespaces
	nvbio
	Define a vector_view POD type and plain_view() for std::vector.
	nvbio::io

Functions
SequenceDataStream *	nvbio::io::open_sequence_file (const char *sequence_file_name, const QualityEncoding qualities, const uint32 max_seqs, const uint32 max_sequence_len, const SequenceEncoding flags, const uint32 trim3, const uint32 trim5)
bool	nvbio::io::load_sequence_file (const Alphabet alphabet, SequenceDataHost *sequence_data, const char *sequence_file_name, const SequenceFlags load_flags, const QualityEncoding qualities)
SequenceDataHost *	nvbio::io::load_sequence_file (const Alphabet alphabet, const char *sequence_file_name, const SequenceFlags load_flags, const QualityEncoding qualities)
SequenceDataOutputStream *	nvbio::io::open_output_sequence_file (const char *sequence_file_name, const char *options)