Detailed description

A small class encapsulating the core data needed by all input threads, i.e. the actual input file, a lock, and the relative statistics

Definition at line 50 of file input_thread.h.

Public Methods
	InputStageData (io::SequenceDataStream *file, const uint32 max_strings, const uint32 max_bps)

Constructor & Destructor Documentation

InputStageData::InputStageData	(	io::SequenceDataStream *	file,
		const uint32	max_strings,
		const uint32	max_bps
	)

inline

constructor

Parameters

file	input sequence file
max_strings	maximum number of strings per batch
max_bps	maximum number of base pairs per batch

Definition at line 58 of file input_thread.h.

uint64 InputStageData::m_bps

Definition at line 72 of file input_thread.h.

io::SequenceDataStream* InputStageData::m_file

Definition at line 68 of file input_thread.h.

uint32 InputStageData::m_max_bps

Definition at line 70 of file input_thread.h.

uint32 InputStageData::m_max_strings

Definition at line 69 of file input_thread.h.

Mutex InputStageData::m_mutex

Definition at line 67 of file input_thread.h.

uint64 InputStageData::m_reads

Definition at line 71 of file input_thread.h.

float InputStageData::m_time

Definition at line 73 of file input_thread.h.

The documentation for this struct was generated from the following file: