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NVBIO
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The collection of queues defining the set of hits - each queue has one element/attribute per hit
Definition at line 138 of file proposal.h.
#include <proposal.h>
Public Types | |
| typedef thrust::device_vector < uint32 > | parent_storage_type |
| typedef thrust::device_vector < packed_seed > | seed_storage_type |
| typedef thrust::device_vector < uint32 > | ssa_storage_type |
| typedef thrust::device_vector < uint32 > | loc_storage_type |
| typedef thrust::device_vector < int32 > | score_storage_type |
| typedef thrust::device_vector < uint32 > | sink_storage_type |
| typedef HitQueuesDeviceView | device_view_type |
| view subtype More... | |
| typedef HitReference< HitQueues > | reference |
| reference subtype More... | |
Public Members | |
| parent_storage_type | parent |
| hit -> read mapping More... | |
| seed_storage_type | hit |
| hit info More... | |
| ssa_storage_type | ssa |
| hit ssa info More... | |
| loc_storage_type | loc |
| hit locations More... | |
| score_storage_type | score |
| hit scores More... | |
| sink_storage_type | sink |
| hit sinks More... | |
| loc_storage_type | opposite_loc |
| hit locations, opposite mate More... | |
| score_storage_type | opposite_score |
| hit scores, opposite mate More... | |
| sink_storage_type | opposite_sink |
| hit sinks, opposite mate More... | |
view subtype
Definition at line 147 of file proposal.h.
| typedef thrust::device_vector<uint32> cufmi::bowtie2::cuda::HitQueues::loc_storage_type |
Definition at line 143 of file proposal.h.
| typedef thrust::device_vector<uint32> cufmi::bowtie2::cuda::HitQueues::parent_storage_type |
Definition at line 140 of file proposal.h.
reference subtype
Definition at line 148 of file proposal.h.
| typedef thrust::device_vector<int32> cufmi::bowtie2::cuda::HitQueues::score_storage_type |
Definition at line 144 of file proposal.h.
| typedef thrust::device_vector<packed_seed> cufmi::bowtie2::cuda::HitQueues::seed_storage_type |
Definition at line 141 of file proposal.h.
| typedef thrust::device_vector<uint32> cufmi::bowtie2::cuda::HitQueues::sink_storage_type |
Definition at line 145 of file proposal.h.
| typedef thrust::device_vector<uint32> cufmi::bowtie2::cuda::HitQueues::ssa_storage_type |
Definition at line 142 of file proposal.h.
| seed_storage_type cufmi::bowtie2::cuda::HitQueues::hit |
hit info
Definition at line 151 of file proposal.h.
| loc_storage_type cufmi::bowtie2::cuda::HitQueues::loc |
hit locations
Definition at line 153 of file proposal.h.
| loc_storage_type cufmi::bowtie2::cuda::HitQueues::opposite_loc |
hit locations, opposite mate
Definition at line 156 of file proposal.h.
| score_storage_type cufmi::bowtie2::cuda::HitQueues::opposite_score |
hit scores, opposite mate
Definition at line 157 of file proposal.h.
| sink_storage_type cufmi::bowtie2::cuda::HitQueues::opposite_sink |
hit sinks, opposite mate
Definition at line 158 of file proposal.h.
| parent_storage_type cufmi::bowtie2::cuda::HitQueues::parent |
hit -> read mapping
Definition at line 150 of file proposal.h.
| score_storage_type cufmi::bowtie2::cuda::HitQueues::score |
hit scores
Definition at line 154 of file proposal.h.
| sink_storage_type cufmi::bowtie2::cuda::HitQueues::sink |
hit sinks
Definition at line 155 of file proposal.h.
| ssa_storage_type cufmi::bowtie2::cuda::HitQueues::ssa |
hit ssa info
Definition at line 152 of file proposal.h.
1.8.4