cufmi::bowtie2::cuda::ScoringQueues Struct Reference

Detailed description

The collection of queues needed by the scoring pipeline

Definition at line 189 of file proposal.h.

#include <proposal.h>

Public Types
typedef PingPongQueues < packed_read >	active_reads_storage_type
typedef HitQueues	hits_storage_type
typedef ReadHitsIndex	read_hits_index_type
typedef ScoringQueuesDeviceView	device_view_type

Public Members
active_reads_storage_type	active_reads
	set of active reads More...
hits_storage_type	hits
	nested sequence More...
read_hits_index_type	hits_index
	read -> hits mapping More...

Member Typedef Documentation

typedef PingPongQueues<packed_read> cufmi::bowtie2::cuda::ScoringQueues::active_reads_storage_type

Definition at line 191 of file proposal.h.

typedef ScoringQueuesDeviceView cufmi::bowtie2::cuda::ScoringQueues::device_view_type

Definition at line 194 of file proposal.h.

typedef HitQueues cufmi::bowtie2::cuda::ScoringQueues::hits_storage_type

Definition at line 192 of file proposal.h.

typedef ReadHitsIndex cufmi::bowtie2::cuda::ScoringQueues::read_hits_index_type

Definition at line 193 of file proposal.h.

Member Data Documentation

active_reads_storage_type cufmi::bowtie2::cuda::ScoringQueues::active_reads

set of active reads

Definition at line 196 of file proposal.h.

hits_storage_type cufmi::bowtie2::cuda::ScoringQueues::hits

nested sequence

Definition at line 197 of file proposal.h.

read_hits_index_type cufmi::bowtie2::cuda::ScoringQueues::hits_index

read -> hits mapping

Definition at line 198 of file proposal.h.

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The documentation for this struct was generated from the following file:

• E:/git/nvbio/vs/proposal.h