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cufmi::bowtie2::cuda::ScoringQueues Struct Reference

Detailed description

The collection of queues needed by the scoring pipeline

Definition at line 189 of file proposal.h.

#include <proposal.h>

Public Types

typedef PingPongQueues
< packed_read > 
typedef HitQueues hits_storage_type
typedef ReadHitsIndex read_hits_index_type
typedef ScoringQueuesDeviceView device_view_type

Public Members

active_reads_storage_type active_reads
 set of active reads More...
hits_storage_type hits
 nested sequence More...
read_hits_index_type hits_index
 read -> hits mapping More...

Member Typedef Documentation

Definition at line 191 of file proposal.h.

Definition at line 194 of file proposal.h.

Definition at line 192 of file proposal.h.

Definition at line 193 of file proposal.h.

Member Data Documentation

active_reads_storage_type cufmi::bowtie2::cuda::ScoringQueues::active_reads

set of active reads

Definition at line 196 of file proposal.h.

hits_storage_type cufmi::bowtie2::cuda::ScoringQueues::hits

nested sequence

Definition at line 197 of file proposal.h.

read_hits_index_type cufmi::bowtie2::cuda::ScoringQueues::hits_index

read -> hits mapping

Definition at line 198 of file proposal.h.

The documentation for this struct was generated from the following file: