nvbio::alndiff::DebugAlignmentStream::Info Struct Reference

Detailed description

Definition at line 36 of file alignment_dbg.cpp.

Public Members
uint32	flag
uint32	ref_id
uint8	mate
uint8	mapQ
uint8	ed
uint8	pad
uint16	subs:16
uint8	ins
uint8	dels
uint8	mms
uint8	gapo
uint8	gape
uint8	has_second
int32	score
int32	sec_score

Member Data Documentation

uint8 nvbio::alndiff::DebugAlignmentStream::Info::dels

Definition at line 48 of file alignment_dbg.cpp.

uint8 nvbio::alndiff::DebugAlignmentStream::Info::ed

Definition at line 43 of file alignment_dbg.cpp.

uint32 nvbio::alndiff::DebugAlignmentStream::Info::flag

Definition at line 38 of file alignment_dbg.cpp.

uint8 nvbio::alndiff::DebugAlignmentStream::Info::gape

Definition at line 52 of file alignment_dbg.cpp.

uint8 nvbio::alndiff::DebugAlignmentStream::Info::gapo

Definition at line 51 of file alignment_dbg.cpp.

uint8 nvbio::alndiff::DebugAlignmentStream::Info::has_second

Definition at line 53 of file alignment_dbg.cpp.

uint8 nvbio::alndiff::DebugAlignmentStream::Info::ins

Definition at line 47 of file alignment_dbg.cpp.

uint8 nvbio::alndiff::DebugAlignmentStream::Info::mapQ

Definition at line 42 of file alignment_dbg.cpp.

uint8 nvbio::alndiff::DebugAlignmentStream::Info::mate

Definition at line 41 of file alignment_dbg.cpp.

uint8 nvbio::alndiff::DebugAlignmentStream::Info::mms

Definition at line 50 of file alignment_dbg.cpp.

uint8 nvbio::alndiff::DebugAlignmentStream::Info::pad

Definition at line 44 of file alignment_dbg.cpp.

uint32 nvbio::alndiff::DebugAlignmentStream::Info::ref_id

Definition at line 39 of file alignment_dbg.cpp.

int32 nvbio::alndiff::DebugAlignmentStream::Info::score

Definition at line 55 of file alignment_dbg.cpp.

int32 nvbio::alndiff::DebugAlignmentStream::Info::sec_score

Definition at line 56 of file alignment_dbg.cpp.

uint16 nvbio::alndiff::DebugAlignmentStream::Info::subs

Definition at line 46 of file alignment_dbg.cpp.

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The documentation for this struct was generated from the following file:

• E:/git/nvbio/nvbio-aln-diff/alignment_dbg.cpp